Transcript 2041 | MetamORF

Transcript

ID CARD

MetamORF ID

2041

ENST00000529255

Name

PNPLA2-204

Strand

Biotype

retained_intron

Start-end positions

823543-825218

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

HGNC:30802

Aliases

ATGL,
desnutrin, ENSG00000177666, FP17548,
HGNC:30802, iPLA2zeta, NCBI:57104,
OFF:PNPLA2, PNPLA2, TTS-2.2

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
100708	162	GTG ...	VAF ...	Ribo-seq	GTG	strong	11	sORFs_org_Human	Intronic sORF	BJ, HEK293, hES, HFF, MDA-MB-231, RPE-1, THP-1
2043	123	CTG ...	LEW ...	Ribo-seq	CTG		23	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
1818700	81	CTG ...	LPE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
2051	294	GTG ...	VPL ...	Ribo-seq	GTG	weak	17	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
100714	57	TTG ...	LLS ...	Ribo-seq	TTG	weak	13	sORFs_org_Human	Intronic sORF	Blood, Brain, HEK293, hES, HFF, MDA-MB-231, RPE-1, THP-1
2055	261	CTG ...	LPG ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
2057	231	CTG ...	LGD ...	Ribo-seq	CTG	moderate	14	sORFs_org_Human	Intronic sORF	BJ, HEK293, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
100706	186	CTG ...	LLG ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	Intronic sORF	BJ, HEK293, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
2049	48	GTG ...	VMR ...	Ribo-seq	GTG		18	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
100712	75	CTG ...	LAG ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, hES, HFF, MDA-MB-231, RPE-1, THP-1
100710	141	CTG ...	LRM ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	Intronic sORF	BJ, HEK293, hES, HFF, MDA-MB-231, RPE-1, THP-1
100704	189	CTG ...	LLL ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	Intronic sORF	BJ, HEK293, hES, HFF, MDA-MB-231, RPE-1, THP-1
2040	126	TTG ...	LLE ...	Ribo-seq	TTG		23	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
100702	219	CTG ...	LAK ...	Ribo-seq	CTG	strong	12	sORFs_org_Human	Intronic sORF	BJ, HEK293, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
2047	51	CTG ...	LVM ...	Ribo-seq	CTG		17	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
2053	288	CTG ...	LSC ...	Ribo-seq	CTG	weak	16	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
2045	114	CTG ...	LPD ...	Ribo-seq	CTG		22	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
100716	54	CTG ...	LST ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	Intronic sORF	Blood, Brain, HEK293, hES, HFF, MDA-MB-231, RPE-1, THP-1

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