Transcript 272593

Transcript

ID CARD

MetamORF ID

272593

ENST00000451104

Name

PITRM1-206

Strand

Biotype

protein_coding

Start-end positions

3137730-3172841

CDS Start-stop positions

3138031-3172779

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

HGNC:17663

Aliases

ENSG00000107959,
HGNC:17663, hMP1, KIAA1104,
MP1, NCBI:10531, OFF:PITRM1,
PITRM1, PreP

Chr 10

ORFs

83 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1502114	126	ATG ...	MPP ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
272595	57	GTG ...	VSA ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
2091020	51	TTG ...	LKM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2306769	60	ATG ...	MPL ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2306749	72	ATG ...	MCP ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1715707	54	GTG ...	VPA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
1201375	48	GTG ...	VGL ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, hES, MDA-MB-231
480158	66	TTG ...	LSI ...	Ribo-seq	TTG	weak	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
1502107	102	CTG ...	LTL ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	BJ, MDA-MB-231
272599	123	GTG ...	VII ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
2306753	108	ATG ...	MTS ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1818116	36	ATG ...	MLG ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
280316	66	ATG ...	MLL ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL
2306730	72	ATG ...	MVE ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
280336	177	ATG ...	MMT ...	Ribo-seq	ATG		8	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1
1502109	111	ATG ...	MEF ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
2294630	63	ATG ...	MRI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HFF, MDA-MB-231
1502103	213	ATG ...	MRL ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1201372	42	TTG ...	LNP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, MDA-MB-231
280324	99	CTG ...	LML ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
280322	96	ATG ...	MLD ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
2306739	126	CTG ...	LCA ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2306726	45	ATG ...	MGF ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2306766	63	TTG ...	LNQ ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2092747	63	TTG ...	LRK ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2294624	51	TTG ...	LNQ ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
892980	147	ACC ...	TTR ...	Ribo-seq	ACC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2306732	78	GTG ...	VLM ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1129716	114	TTG ...	LIF ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231
1720931	84	CTG ...	LVE ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1128260	51	ATG ...	MPT ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293
1128258	36	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293
1818114	69	GTG ...	VNA ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
2306773	141	CTG ...	LTT ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
892978	102	CGG ...	RSL ...	Ribo-seq	CGG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
280332	198	GTG ...	VII ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
480160	81	GTG ...	VFL ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
1715699	54	CTG ...	LAD ...	Ribo-seq	CTG	strong	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
280334	174	ATG ...	MTQ ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, LCL, MDA-MB-231, RPE-1
2306764	102	GTG ...	VAR ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
272601	33	CTG ...	LCV ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
2294604	87	TTG ...	LGR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1715711	45	ATG ...	MIE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
280326	117	TTG ...	LAQ ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
2306728	69	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2294620	33	CTG ...	LGP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
3199160	93	AGT ...	SLL ...	Ribo-seq	AGT	weak	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
1720934	216	ATG ...	MIY ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2950361	30	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	hES
1502105	96	CTG ...	LGT ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	BJ, MDA-MB-231
1128264	75	CTG ...	LCP ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231
1129714	99	CTG ...	LCP ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
280328	123	CTG ...	LAL ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
2294602	78	CTG ...	LST ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
481236	60	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293T
2294622	36	ATG ...	MWP ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
480162	84	CTG ...	LVF ...	Ribo-seq	CTG	strong	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
280338	33	CTG ...	LCV ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
2294628	192	ATG ...	MRG ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1128262	60	CTG ...	LVE ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293
1980746	66	GTG ...	VFS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
1715715	90	TTG ...	LWV ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
272592	39	TTG ...	LRR ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	BJ, HAP1, LCL, MDA-MB-231
2306782	69	GTG ...	VQR ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2306734	117	CTG ...	LPN ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
892974	30	CCC ...	PGF ...	Ribo-seq	CCC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2294608	33	TTG ...	LKK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
280320	93	TTG ...	LDI ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
892982	156	TTC ...	FFL ...	Ribo-seq	TTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1720938	90	TTG ...	LWV ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2306762	87	TTG ...	LLQ ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1715709	36	TTG ...	LRL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2306775	183	ATG ...	MRG ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1818112	54	CTG ...	LSP ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
280330	129	TTG ...	LNL ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
2294626	33	GTG ...	VHP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
272597	84	ATG ...	MAT ...	Ribo-seq	ATG	strong	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL
2294612	33	TTG ...	LSA ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2091016	60	GTG ...	VNA ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2091014	45	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2306771	111	GTG ...	VTH ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
892984	162	ACA ...	TDF ...	Ribo-seq	ACA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1715713	69	GTG ...	VQR ...	Ribo-seq	GTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231

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