Transcript 233 | MetamORF

Transcript

ID CARD

MetamORF ID

233

ENST00000393104

Name

PDCD4-202

Strand

Biotype

protein_coding

Start-end positions

110871795-110900005

CDS Start-stop positions

110876744-110898088

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

HGNC:8763

Aliases

ENSG00000150593,
H731, HGNC:8763, NCBI:27250,
OFF:PDCD4, PDCD4

Chr 10

ORFs

60 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
632281	36	CTG ...	LGE ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HeLa, MM1S, RPE-1, THP-1
273	78	ATG ...	MRE ...	Ribo-seq	ATG	moderate	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
241	51	GTG ...	VSG ...	Ribo-seq	GTG	moderate	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
247	66	TTG ...	LLE ...	Ribo-seq	TTG	weak	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
1817343	96	ATG ...	MEV ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
98679	30	ATG ...	MWK ...	Ribo-seq	ATG	weak	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
263	45	CTG ...	LEV ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1, THP-1
259	57	GTG ...	VCG ...	Ribo-seq	GTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
249	57	CTG ...	LLE ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
98677	33	CTG ...	LMW ...	Ribo-seq	CTG	weak	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
261	45	GTG ...	VGL ...	Ribo-seq	GTG	moderate	14	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
278320	33	GTG ...	VMK ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, RPE-1
278322	30	ATG ...	MKK ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, RPE-1
782	33	ATG ...	MTR ...	Ribo-seq	ATG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
1817345	51	CTG ...	LNI ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
278338	33	ATG ...	MTR ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
805	69	CTG ...	LNI ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1
265	39	GTG ...	VGS ...	Ribo-seq	GTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
235	30	GTG ...	VGV ...	Ribo-seq	GTG	strong	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
1817350	129	TTG ...	LMS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
257	75	GTG ...	VES ...	Ribo-seq	GTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
271	63	CTG ...	LNI ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
243	36	CTG ...	LDR ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
278336	36	ATG ...	MMT ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL
277	39	ATG ...	MSH ...	Ribo-seq	ATG	weak	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
778	39	ATG ...	MMM ...	Ribo-seq	ATG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
255	30	CTG ...	LLW ...	Ribo-seq	CTG	moderate	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
278316	39	GTG ...	VQA ...	Ribo-seq	GTG	weak	15	sORFs_org_Human	sORF Upstream	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
1817352	126	ATG ...	MSD ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
251	54	TTG ...	LEM ...	Ribo-seq	TTG	moderate	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
232	57	CTG ...	LAE ...	Ribo-seq	CTG	strong	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
807	99	ATG ...	MFS ...	Ribo-seq	ATG		18	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
1817354	33	CTG ...	LLK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
784	39	TTG ...	LSM ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
799	51	GTG ...	VGS ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
793	87	GTG ...	VES ...	Ribo-seq	GTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
898965	132	GGA ...	GCP ...	Ribo-seq	GGA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
267	81	CTG ...	LET ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
797	57	CTG ...	LEV ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1, THP-1
1135050	48	CTG ...	LTR ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HeLa, MM1S, RPE-1
803	75	CTG ...	LKL ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
801	87	CTG ...	LET ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
253	48	ATG ...	MEF ...	Ribo-seq	ATG	strong	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
278341	30	GTG ...	VEY ...	Ribo-seq	GTG	strong	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
98695	87	ATG ...	MFS ...	Ribo-seq	ATG		5	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, LCL
239	66	GTG ...	VQE ...	Ribo-seq	GTG	moderate	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
809	57	TTG ...	LSF ...	Ribo-seq	TTG		16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
900545	135	ACA ...	TFI ...	Ribo-seq	ACA		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, Jurkat
3199575	123	ACA ...	TFI ...	Ribo-seq	ACA		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
795	69	GTG ...	VCG ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
98673	69	ATG ...	MEI ...	Ribo-seq	ATG	moderate	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
780	36	ATG ...	MMT ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
275	63	ATG ...	MKF ...	Ribo-seq	ATG	moderate	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
269	69	CTG ...	LKL ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
278334	39	ATG ...	MMM ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
278318	51	GTG ...	VTL ...	Ribo-seq	GTG	weak	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, LCL, RPE-1
900543	144	GGA ...	GCP ...	Ribo-seq	GGA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
237	69	GTG ...	VVQ ...	Ribo-seq	GTG	strong	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
1817347	48	GTG ...	VPC ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
245	33	TTG ...	LSM ...	Ribo-seq	TTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, U2OS

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