Transcript 4715 | MetamORF

Transcript

ID CARD

MetamORF ID

4715

ENST00000422031

Name

OTUB1-202

Strand

Biotype

protein_coding

Start-end positions

63985853-63998420

CDS Start-stop positions

63986457-63997546

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

HGNC:23077

Aliases

ENSG00000167770,
FLJ20113, FLJ40710, HGNC:23077,
NCBI:55611, OFF:OTUB1, OTUB1

Chr 11

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
294604	192	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
294600	240	GTG ...	VSR ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, RPE-1
8624	84	CTG ...	LPR ...	Ribo-seq	CTG		31	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
908862	60	AAG ...	KTW ...	Ribo-seq	AAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
8626	45	CTG ...	LNS ...	Ribo-seq	CTG		30	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407879	150	CGG ...	RSY ...	Ribo-seq	CGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
294602	204	ATG ...	MGW ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
941354	186	TTG ...	LPG ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain
908856	138	AGG ...	RSM ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
908858	54	CAA ...	QLF ...	Ribo-seq	CAA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916496	69	AAG ...	KTW ...	Ribo-seq	AAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
4723	36	CTG ...	LNS ...	Ribo-seq	CTG		27	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
3200547	69	AGA ...	RSR ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
916498	39	TCA ...	SQL ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
4714	48	ATG ...	MMK ...	Ribo-seq	ATG		25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
908864	30	TCA ...	SQL ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
8622	90	CTG ...	LCL ...	Ribo-seq	CTG		31	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4719	81	CTG ...	LCL ...	Ribo-seq	CTG		29	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
916492	78	CAG ...	QQG ...	Ribo-seq	CAG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
102571	66	GTG ...	VLT ...	Ribo-seq	GTG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
102574	45	ATG ...	MKP ...	Ribo-seq	ATG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
916494	66	GCA ...	AAQ ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
4725	120	GTG ...	VQG ...	Ribo-seq	GTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
1821691	48	TTG ...	LEA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
4721	75	CTG ...	LPR ...	Ribo-seq	CTG		29	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
908860	36	GAG ...	EQG ...	Ribo-seq	GAG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
4717	51	CTG ...	LFL ...	Ribo-seq	CTG	weak	25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
908866	132	GGT ...	GGA ...	Ribo-seq	GGT	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2616414	66	AGC ...	SRS ...	Ribo-seq	AGC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, THP-1
908868	39	CGG ...	RRG ...	Ribo-seq	CGG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat

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