Transcript 11811 | MetamORF

Transcript

ID CARD

MetamORF ID

11811

ENST00000552423

Name

OS9-221

Strand

Biotype

nonsense_mediated_decay

Start-end positions

57694160-57696030

CDS Start-stop positions

57694162-57695581

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:16994

Aliases

ENSG00000135506,
ERLEC2, HGNC:16994, NCBI:10956,
OFF:OS9, OS-9, OS9

Chr 12

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
11819	138	CTG ...	LLL ...	Ribo-seq	CTG		30	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
11821	132	CTG ...	LGL ...	Ribo-seq	CTG		30	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
108514	234	GTG ...	VVI ...	Ribo-seq	GTG		23	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MM1S, RPE-1, THP-1, U2OS
411447	219	TCT ...	SKY ...	Ribo-seq	TCT		2	sORFs_org_Human	InCDS NMD Overlapping sORF	HCT116, Jurkat
11833	42	CTG ...	LPL ...	Ribo-seq	CTG		19	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, hES, HFF, MM1S, RPE-1, THP-1, U2OS
11813	159	CTG ...	LSS ...	Ribo-seq	CTG		30	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
923192	90	TGG ...	WDR ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
642043	78	CTG ...	LEL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, HeLa, MDA-MB-231, RPE-1, THP-1
108518	189	CTG ...	LPA ...	Ribo-seq	CTG		16	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Brain, guo_2014, HEK293, HeLa, hES, HFF, MM1S, THP-1, U2OS
642045	57	GTG ...	VKG ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231, MM1S, RPE-1, THP-1
923194	36	AGA ...	RSC ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
11815	150	TTG ...	LLG ...	Ribo-seq	TTG		30	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
11825	108	CTG ...	LTG ...	Ribo-seq	CTG		30	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
11835	36	TTG ...	LPV ...	Ribo-seq	TTG		14	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, hES, HFF, U2OS
11831	72	CTG ...	LSE ...	Ribo-seq	CTG		27	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
411449	150	GAG ...	EET ...	Ribo-seq	GAG		3	sORFs_org_Human	InCDS NMD Overlapping sORF	HCT116, HeLa, THP-1
11823	123	CTG ...	LLP ...	Ribo-seq	CTG		30	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
301386	45	ATG ...	MGS ...	Ribo-seq	ATG		19	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
11810	162	CTG ...	LLS ...	Ribo-seq	CTG		30	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
108516	231	GTG ...	VIV ...	Ribo-seq	GTG		23	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MM1S, RPE-1, THP-1, U2OS
642047	36	CTG ...	LLT ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Brain, loayza_puch_2016, MDA-MB-231, THP-1
11827	87	CTG ...	LNL ...	Ribo-seq	CTG		30	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
301384	57	GTG ...	VRC ...	Ribo-seq	GTG		20	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
11817	141	CTG ...	LLL ...	Ribo-seq	CTG		31	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
642039	96	ATG ...	MSV ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, HeLa, MDA-MB-231, RPE-1, THP-1
11837	123	TTG ...	LSP ...	Ribo-seq	TTG	weak	10	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1, U2OS
11829	81	CTG ...	LEE ...	Ribo-seq	CTG		28	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
11839	39	GTG ...	VSP ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231, THP-1

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