Transcript 112239

Transcript

ID CARD

MetamORF ID

112239

ENST00000389142

Name

OS9-203

Strand

Biotype

protein_coding

Start-end positions

57694147-57721557

CDS Start-stop positions

57694162-57720909

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

HGNC:16994

Aliases

ENSG00000135506,
ERLEC2, HGNC:16994, NCBI:10956,
OFF:OS9, OS-9, OS9

Chr 12

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
645075	111	ATG ...	MGG ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1
308449	114	ATG ...	MNG ...	Ribo-seq	ATG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
707882	54	AGA ...	RSC ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
308423	63	ATG ...	MGS ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
308437	183	GTG ...	VIQ ...	Ribo-seq	GTG		10	sORFs_org_Human	InCDS Overlapping sORF	BJ, HeLa, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
645073	132	ATG ...	MGP ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1
308427	198	ATG ...	MMK ...	Ribo-seq	ATG		13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
308435	222	CTG ...	LQK ...	Ribo-seq	CTG		13	sORFs_org_Human	InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
308433	225	ATG ...	MLQ ...	Ribo-seq	ATG		13	sORFs_org_Human	InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
308425	243	GTG ...	VKS ...	Ribo-seq	GTG		16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
112238	57	CTG ...	LLW ...	Ribo-seq	CTG		18	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
308441	138	ATG ...	MRM ...	Ribo-seq	ATG		12	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
308443	132	ATG ...	MRM ...	Ribo-seq	ATG		13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
707884	54	TTA ...	LWT ...	Ribo-seq	TTA		3	sORFs_org_Human	InCDS Overlapping sORF	HeLa, Jurkat, THP-1
308429	234	CTG ...	LWM ...	Ribo-seq	CTG		13	sORFs_org_Human	InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
645071	138	ATG ...	MAM ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
112241	276	CTG ...	LWL ...	Ribo-seq	CTG		5	sORFs_org_Human	InCDS Overlapping sORF	Brain, HEK293
308447	120	ATG ...	MRM ...	Ribo-seq	ATG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
112243	264	TTG ...	LQI ...	Ribo-seq	TTG		6	sORFs_org_Human	InCDS Overlapping sORF	Brain, HEK293, HeLa
308421	75	GTG ...	VRC ...	Ribo-seq	GTG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
645069	195	ATG ...	MKQ ...	Ribo-seq	ATG		11	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
308431	228	ATG ...	MML ...	Ribo-seq	ATG		13	sORFs_org_Human	InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
543263	30	GTG ...	VEQ ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231, RPE-1, U2OS
707886	201	GGG ...	GMM ...	Ribo-seq	GGG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
308451	90	TTG ...	LRR ...	Ribo-seq	TTG		13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
308445	126	ATG ...	MKM ...	Ribo-seq	ATG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
308439	144	ATG ...	MRM ...	Ribo-seq	ATG		12	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
707888	132	CAC ...	HIH ...	Ribo-seq	CAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat

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