Transcript 12527 | MetamORF

Transcript

ID CARD

MetamORF ID

12527

ENST00000251074

Name

NUP37-201

Strand

Biotype

protein_coding

Start-end positions

102074197-102118583

CDS Start-stop positions

102074354-102118518

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

HGNC:29929

Aliases

ENSG00000075188,
FLJ22618, HGNC:29929, MGC5585,
NCBI:79023, NUP37, OFF:NUP37

Chr 12

ORFs

47 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1096635	39	GTG ...	VTI ...	Ribo-seq	GTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa
1740373	123	ATG ...	MVA ...	Ribo-seq	ATG		9	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
303093	42	TTG ...	LVN ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, LCL
485193	108	GTG ...	VTL ...	Ribo-seq	GTG		12	sORFs_org_Human	Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, MM1S, RPE-1, THP-1, U2OS
1097167	108	ATG ...	MWS ...	Ribo-seq	ATG		7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
303105	42	CTG ...	LPT ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
411911	39	ATC ...	ILR ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
303097	87	TTG ...	LQR ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL
1096637	63	TTG ...	LKA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
925033	48	GAA ...	EML ...	Ribo-seq	GAA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1518098	36	TTG ...	LIP ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, hES, MDA-MB-231
925036	81	AAT ...	NFH ...	Ribo-seq	AAT	weak	1	sORFs_org_Human	Overlapping sORF Upstream	Jurkat
303107	45	ATG ...	MLP ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
540242	66	TTG ...	LNF ...	Ribo-seq	TTG	weak	15	sORFs_org_Human	Overlapping sORF Upstream	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
925031	39	CCT ...	PTL ...	Ribo-seq	CCT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1738161	45	GTG ...	VCN ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
303087	66	CTG ...	LAS ...	Ribo-seq	CTG	strong	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
925022	33	AGG ...	RRL ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
485191	102	TTG ...	LSS ...	Ribo-seq	TTG	moderate	12	sORFs_org_Human	Overlapping sORF Upstream	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, MM1S, RPE-1, THP-1
1097169	120	GTG ...	VAI ...	Ribo-seq	GTG		9	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
3330655	981	ATG ...	MKQ ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
303095	75	ATG ...	MEQ ...	Ribo-seq	ATG	strong	5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL
1096632	30	TTG ...	LEP ...	Ribo-seq	TTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
643041	45	GTG ...	VLK ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, THP-1
2554066	57	ATG ...	MIF ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa
1300156	129	TTG ...	LHM ...	Ribo-seq	TTG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
1738178	48	ATG ...	MVW ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1738164	39	CTG ...	LAK ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
303103	33	CTG ...	LWI ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, Jurkat, LCL, MDA-MB-231, RPE-1
12529	48	CTG ...	LVI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293
12526	39	CTG ...	LDC ...	Ribo-seq	CTG	strong	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
306065	78	GTG ...	VTI ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HeLa, hES, LCL, MDA-MB-231
925024	30	TCG ...	SNI ...	Ribo-seq	TCG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
12531	57	TTG ...	LQP ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293
925028	132	TTG ...	LHM ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
303101	75	TTG ...	LEL ...	Ribo-seq	TTG	strong	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
303091	33	TTG ...	LGY ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, LCL, THP-1
303109	57	ATG ...	MPQ ...	Ribo-seq	ATG	moderate	16	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, Flp-In_T-REx-293, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, RPE-1
1097165	99	TTG ...	LAR ...	Ribo-seq	TTG		7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231
303089	45	TTG ...	LDL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
643043	48	CTG ...	LVL ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, THP-1
12533	69	GTG ...	VKI ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1740367	114	CTG ...	LFT ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
303099	51	GTG ...	VCA ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, RPE-1
306063	36	GTG ...	VCA ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, LCL, MDA-MB-231, RPE-1
925026	30	GGT ...	GHW ...	Ribo-seq	GGT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1738159	33	TTG ...	LEE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231

Export data