Transcript 3394 | MetamORF

Transcript

ID CARD

MetamORF ID

3394

ENST00000526569

Name

NUP160-202

Strand

Biotype

retained_intron

Start-end positions

47803437-47806515

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

HGNC:18017

Aliases

ENSG00000030066,
FLJ22583, HGNC:18017, KIAA0197,
NCBI:23279, NUP160, OFF:NUP160

Chr 11

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3396	42	ATG ...	MLV ...	Ribo-seq	ATG	weak	8	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231
3200275	84	AGA ...	RLL ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	Intronic sORF	HEK293
1205320	54	TTG ...	LQE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Intronic sORF	HAP1, hES, MDA-MB-231
1205323	78	TTG ...	LWS ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	Intronic sORF	Blood, HAP1, MDA-MB-231
1724867	90	ATG ...	MPL ...	Ribo-seq	ATG		4	sORFs_org_Human	Intronic sORF	Blood, HeLa, MDA-MB-231
407409	153	GAG ...	ELF ...	Ribo-seq	GAG		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
906952	93	CCC ...	PWC ...	Ribo-seq	CCC		1	sORFs_org_Human	Intronic sORF	Jurkat
906948	72	GGT ...	GSC ...	Ribo-seq	GGT		1	sORFs_org_Human	Intronic sORF	Jurkat
906950	81	GTC ...	VNV ...	Ribo-seq	GTC		1	sORFs_org_Human	Intronic sORF	Jurkat
407407	51	GGA ...	GRC ...	Ribo-seq	GGA		1	sORFs_org_Human	Intronic sORF	HCT116
101894	156	GTG ...	VEL ...	Ribo-seq	GTG		11	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, THP-1
906954	99	CTA ...	LHP ...	Ribo-seq	CTA		1	sORFs_org_Human	Intronic sORF	Jurkat
906966	63	TAT ...	YIS ...	Ribo-seq	TAT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
3393	39	TTG ...	LVP ...	Ribo-seq	TTG	strong	11	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, U2OS
906968	144	TTC ...	FQE ...	Ribo-seq	TTC		1	sORFs_org_Human	Intronic sORF	Jurkat

Export data