Transcript 524 | MetamORF

Transcript

ID CARD

MetamORF ID

524

ENST00000484772

Name

NUDC-204

Strand

Biotype

processed_transcript

Start-end positions

26945135-26946184

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

HGNC:8045

Aliases

ENSG00000090273,
HGNC:8045, NCBI:10726, NudC,
NUDC, OFF:NUDC

Chr 1

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
528	30	GTG ...	VRL ...	Ribo-seq	GTG	moderate	17	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, HFF, LCL, MM1S, RPE-1, U2OS
523	123	CTG ...	LSD ...	Ribo-seq	CTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
532	66	ATG ...	MTS ...	Ribo-seq	ATG	weak	26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
480515	30	CTG ...	LPS ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HEK293T, HeLa
526	114	CTG ...	LDS ...	Ribo-seq	CTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
1820597	60	CTG ...	LPA ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	ncRNA sORF	HeLa
530	90	GTG ...	VEK ...	Ribo-seq	GTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
406141	87	TCA ...	SIR ...	Ribo-seq	TCA	moderate	2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
897784	45	TGG ...	WGC ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
897759	39	ACC ...	TWT ...	Ribo-seq	ACC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
281851	45	CTG ...	LRS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, LCL
897747	42	AGA ...	RST ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
1135220	51	GTG ...	VTL ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, HeLa, hES, HFF
897827	39	CAT ...	HGS ...	Ribo-seq	CAT	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
534	48	CTG ...	LPT ...	Ribo-seq	CTG		21	sORFs_org_Human	ncRNA sORF	BJ, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1
1820595	66	CTG ...	LSL ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	ncRNA sORF	HeLa
897771	111	GAC ...	DSE ...	Ribo-seq	GAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
3185836	60	TTG ...	LLP ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HeLa

Export data