Transcript 463 | MetamORF

Transcript

ID CARD

MetamORF ID

463

ENST00000321265

Name

NUDC-201

Strand

Biotype

protein_coding

Start-end positions

26921726-26946862

CDS Start-stop positions

26921849-26946181

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:8045

Aliases

ENSG00000090273,
HGNC:8045, NCBI:10726, NudC,
NUDC, OFF:NUDC

Chr 1

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
462	96	CTG ...	LCE ...	Ribo-seq	CTG	weak	21	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
448786	84	AGA ...	RST ...	Ribo-seq	AGA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
1126583	108	ATG ...	MQR ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
406089	96	GAG ...	EPA ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116
1820637	123	TTG ...	LWA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
448766	129	TCA ...	SIR ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1304284	66	AGC ...	SGS ...	Ribo-seq	AGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
532	66	ATG ...	MTS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
881685	51	GCT ...	AGP ...	Ribo-seq	GCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1820643	90	CTG ...	LAQ ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1126586	96	ATG ...	MRP ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293
99517	30	TTG ...	LGP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative sORF Upstream	HEK293, MDA-MB-231
86729	93	GTG ...	VTL ...	Ribo-seq	GTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, HeLa, hES, HFF, LCL, RPE-1
897582	180	ACG ...	TTR ...	Ribo-seq	ACG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
1820640	96	ATG ...	MGL ...	Ribo-seq	ATG	strong	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
245568	87	CTG ...	LRS ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, LCL
406097	63	AGC ...	SGS ...	Ribo-seq	AGC		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HCT116, Jurkat
86724	147	CTG ...	LCI ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, HeLa, LCL, MM1S
448732	99	GAG ...	EPA ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116

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