Transcript 2812 | MetamORF

Transcript

ID CARD

MetamORF ID

2812

ENST00000458064

Name

NUCB2-202

Strand

Biotype

protein_coding

Start-end positions

17295322-17331523

CDS Start-stop positions

17295324-17331419

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:8044

Aliases

ENSG00000070081,
HGNC:8044, NCBI:4925, NEFA,
NUCB2, OFF:NUCB2

Chr 11

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
904942	42	AGG ...	RNS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
527155	144	TTG ...	LLY ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, RPE-1, THP-1, U2OS
527157	129	ATG ...	MNL ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293T, HFF, U2OS
481860	66	CTG ...	LMD ...	Ribo-seq	CTG		7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293T, HeLa, MDA-MB-231, THP-1
904940	66	GAT ...	DGT ...	Ribo-seq	GAT	strong	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1819672	39	ATG ...	MSI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
904936	42	ATG ...	MTR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, Jurkat, MDA-MB-231
481862	63	ATG ...	MDW ...	Ribo-seq	ATG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293T, HeLa, MDA-MB-231, THP-1
634005	30	GTG ...	VMD ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	BJ, HeLa, MDA-MB-231, RPE-1, THP-1
1730812	195	ATG ...	MKI ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
904944	33	TCC ...	SIR ...	Ribo-seq	TCC	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2811	39	TTG ...	LLS ...	Ribo-seq	TTG	moderate	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
1504771	33	ATG ...	MTL ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF
3305830	1263	ATG ...	MRW ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
2311902	33	ATG ...	MKI ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1723617	57	TTG ...	LMC ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, hES, MDA-MB-231, RPE-1
904934	54	ATC ...	IWN ...	Ribo-seq	ATC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3221290	42	TTG ...	LTP ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
904930	30	ATA ...	IFT ...	Ribo-seq	ATA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1504768	45	ATG ...	MKK ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF
904932	33	GGA ...	GKC ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1723619	54	ATG ...	MCW ...	Ribo-seq	ATG	weak	5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
633997	63	GTG ...	VED ...	Ribo-seq	GTG	strong	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
2311906	48	ATG ...	MTL ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, MDA-MB-231
1297016	57	GTG ...	VIW ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293T, MDA-MB-231
527153	156	ATG ...	MKI ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, RPE-1, THP-1, U2OS
1297020	108	ATG ...	MSF ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293T, HFF
904928	39	GTT ...	VYL ...	Ribo-seq	GTT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
904926	36	CTT ...	LSL ...	Ribo-seq	CTT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1298447	183	TTG ...	LLY ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T
101284	30	CTG ...	LLL ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, RPE-1, THP-1
904924	45	ACA ...	TVL ...	Ribo-seq	ACA	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
634001	36	CTG ...	LDF ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, THP-1
904922	51	CCT ...	PAT ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1297022	69	ATG ...	MIN ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T
2326155	48	ATG ...	MKI ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1

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