Transcript 8026 | MetamORF

Transcript

ID CARD

MetamORF ID

8026

ENST00000487214

Name

NOC2L-205

Strand

Biotype

processed_transcript

Start-end positions

954426-959309

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:24517

Aliases

DKFZP564C186,
ENSG00000188976, HGNC:24517, NCBI:26155,
NET15, NET7, NIR,
NOC2L, OFF:NOC2L, PPP1R112

Chr 1

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3047876	60	GTG ...	VRR ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	ncRNA sORF	MM1S
357563	63	CTG ...	LHQ ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
8803	84	CTG ...	LVT ...	Ribo-seq	CTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
14119	36	GTG ...	VPL ...	Ribo-seq	GTG	moderate	15	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, THP-1
404129	189	GAG ...	EED ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	HCT116
8025	36	CTG ...	LFG ...	Ribo-seq	CTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
8149	39	CTG ...	LLF ...	Ribo-seq	CTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
657325	51	CTG ...	LRR ...	Ribo-seq	CTG		10	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
357233	42	CTG ...	LSP ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, LCL, MDA-MB-231, MM1S, RPE-1
1356443	69	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
893139	84	ATT ...	IQC ...	Ribo-seq	ATT	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
1714885	114	ATG ...	MLW ...	Ribo-seq	ATG		3	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa
1111047	180	CTG ...	LQE ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
14036	30	CTG ...	LST ...	Ribo-seq	CTG	weak	17	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
1299244	114	GTG ...	VST ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, RPE-1
403949	33	TTT ...	FGK ...	Ribo-seq	TTT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat

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