Transcript 1092 | MetamORF

Transcript

ID CARD

MetamORF ID

1092

ENST00000465087

Name

NET1-204

Strand

Biotype

processed_transcript

Start-end positions

5452419-5453153

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAA ...

Genome browsers

UCSC

Gene

HGNC:14592

Aliases

ARHGEF8,
ENSG00000173848, HGNC:14592, NCBI:10276,
NET1, NET1A, OFF:NET1

Chr 10

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1091	144	CTG ...	LWS ...	Ribo-seq	CTG		16	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
403911	216	TCA ...	SEM ...	Ribo-seq	TCA		1	sORFs_org_Human	ncRNA sORF	HCT116
406023	138	TCA ...	SEM ...	Ribo-seq	TCA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
272620	36	GTG ...	VHC ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, hES, LCL, MDA-MB-231, MM1S, RPE-1
190212	30	ATG ...	MKC ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231
406025	111	GAG ...	ESL ...	Ribo-seq	GAG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
406021	150	AGT ...	SAL ...	Ribo-seq	AGT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
403909	228	AGT ...	SAL ...	Ribo-seq	AGT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
893054	138	GGA ...	GHH ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
99796	129	CTG ...	LDI ...	Ribo-seq	CTG		13	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
403913	69	TAT ...	YEM ...	Ribo-seq	TAT	strong	1	sORFs_org_Human	ncRNA sORF	HCT116

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