Transcript 272623

Transcript

ID CARD

MetamORF ID

272623

ENST00000380359

Name

NET1-202

Strand

Biotype

protein_coding

Start-end positions

5446611-5458463

CDS Start-stop positions

5446766-5456994

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

HGNC:14592

Aliases

ARHGEF8,
ENSG00000173848, HGNC:14592, NCBI:10276,
NET1, NET1A, OFF:NET1

Chr 10

ORFs

61 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
190212	30	ATG ...	MKC ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
272633	48	GTG ...	VAN ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Downstream Overlapping sORF	HeLa, LCL
280536	69	ATG ...	MGS ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
1715789	126	ATG ...	MPT ...	Ribo-seq	ATG	weak	6	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
272629	51	CTG ...	LYS ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, LCL, MDA-MB-231, RPE-1
1715776	39	ATG ...	MEL ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1
1502338	165	ATG ...	MEL ...	Ribo-seq	ATG		7	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1502348	120	ATG ...	MKS ...	Ribo-seq	ATG		5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
272622	54	TTG ...	LVI ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL
1715774	36	ATG ...	MSI ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, RPE-1
1502344	33	CTG ...	LMF ...	Ribo-seq	CTG		9	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1721127	90	ATG ...	MSI ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
1497482	117	GTG ...	VVT ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, hES, MDA-MB-231, RPE-1
893047	75	ACG ...	TWL ...	Ribo-seq	ACG	moderate	3	sORFs_org_Human	Alternative sORF Upstream	HeLa, Jurkat, THP-1
1502346	165	GTG ...	VNP ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231
1497486	93	CTG ...	LPR ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, hES, MDA-MB-231, RPE-1
893045	81	ATG ...	MGT ...	Ribo-seq	ATG	strong	19	sORFs_org_Human Johnstone2016	Alternative sORF Upstream	BJ, Blood, Brain_tumor, Breast, HEK293, HeLa, hES, HFF, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1
1814987	51	GTG ...	VKY ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1497516	42	GTG ...	VAL ...	Ribo-seq	GTG	strong	5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231
2797503	54	CTG ...	LHS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative sORF Upstream	RPE-1
1715816	78	GTG ...	VRG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
1497514	150	ATG ...	MWL ...	Ribo-seq	ATG	weak	3	sORFs_org_Human Johnstone2016	Alternative Downstream Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, HFF
1721137	33	TTG ...	LQE ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2797505	33	CTG ...	LTR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative sORF Upstream	RPE-1
1814991	33	GTG ...	VEM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1715808	192	ATG ...	MTC ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1814989	36	TTG ...	LAS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
403907	45	GAA ...	EEK ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	Alternative sORF Upstream	HCT116
1497475	102	GTG ...	VAA ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, MDA-MB-231, MM1S, RPE-1
1502353	36	GTG ...	VPW ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, MDA-MB-231, MM1S, RPE-1
1401797	33	GTG ...	VCL ...	Ribo-seq	GTG	weak	13	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
1715806	231	ATG ...	MTP ...	Ribo-seq	ATG	weak	5	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
1201382	39	CTG ...	LME ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
1502340	159	CTG ...	LSD ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, hES, MDA-MB-231, RPE-1
1715768	51	ATG ...	MMR ...	Ribo-seq	ATG	weak	4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
1497518	36	CTG ...	LAC ...	Ribo-seq	CTG	strong	5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231
1497507	60	GTG ...	VVQ ...	Ribo-seq	GTG	strong	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1
1715814	114	CTG ...	LSC ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1715792	105	ATG ...	MSR ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1715812	144	TTG ...	LPP ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1715772	42	CTG ...	LEV ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, RPE-1
2797501	60	GTG ...	VPL ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative sORF Upstream	RPE-1
1497479	78	CTG ...	LGR ...	Ribo-seq	CTG	strong	6	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, MDA-MB-231, MM1S, RPE-1
403917	162	AAA ...	KRL ...	Ribo-seq	AAA	weak	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HCT116
893049	120	AGT ...	SST ...	Ribo-seq	AGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1497491	36	ATG ...	MEQ ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
893051	105	TCG ...	SCH ...	Ribo-seq	TCG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1715778	33	CTG ...	LSD ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, RPE-1
272631	51	CTG ...	LVA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Downstream Overlapping sORF	HeLa, LCL
1497484	114	GTG ...	VTT ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, hES, MDA-MB-231, RPE-1
1401793	69	CTG ...	LPR ...	Ribo-seq	CTG	weak	14	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
1132538	78	TTG ...	LIK ...	Ribo-seq	TTG	weak	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1
1715770	48	ATG ...	MRL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, RPE-1
1715818	60	CTG ...	LRG ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Blood
272625	51	GTG ...	VIW ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL
403919	33	GCA ...	ACR ...	Ribo-seq	GCA	weak	1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
1497512	60	ATG ...	MKT ...	Ribo-seq	ATG	weak	7	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
1715760	132	CTG ...	LLH ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative sORF Upstream	Blood, MDA-MB-231, RPE-1
1401795	60	GTG ...	VAE ...	Ribo-seq	GTG	strong	14	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
1497510	63	TTG ...	LMK ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231
1721135	48	TTG ...	LRI ...	Ribo-seq	TTG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1

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