Transcript 480165

Transcript

ID CARD

MetamORF ID

480165

ENST00000355029

Name

NET1-201

Strand

Biotype

protein_coding

Start-end positions

5412551-5458463

CDS Start-stop positions

5412693-5456994

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

HGNC:14592

Aliases

ARHGEF8,
ENSG00000173848, HGNC:14592, NCBI:10276,
NET1, NET1A, OFF:NET1

Chr 10

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
901249	168	CCA ...	PWS ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
2541724	171	GTG ...	VPW ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293
3199788	153	TGG ...	WRL ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2307126	105	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
480164	30	ATG ...	MTA ...	Ribo-seq	ATG	weak	13	sORFs_org_Human	sORF Upstream	Blood, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, U2OS
893037	282	CCA ...	PWS ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
893041	75	ATG ...	MFP ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, Jurkat, MDA-MB-231
893043	33	TGG ...	WPQ ...	Ribo-seq	TGG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1980791	30	CTG ...	LAP ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
893039	267	TGG ...	WRL ...	Ribo-seq	TGG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat

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