Transcript 5751 | MetamORF

Transcript

ID CARD

MetamORF ID

5751

ENST00000529645

Name

NDUFS8-211

Strand

Biotype

nonsense_mediated_decay

Start-end positions

68032161-68035683

CDS Start-stop positions

-68032359

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

HGNC:7715

Aliases

CI-23k,
ENSG00000110717, HGNC:7715, NCBI:4728,
NDUFS8, OFF:NDUFS8, TYKY

Chr 11

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5753	102	GTG ...	VNM ...	Ribo-seq	GTG		34	sORFs_org_Human	NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
103124	39	CTG ...	LWT ...	Ribo-seq	CTG		9	sORFs_org_Human	NMD sORF	Flp-In_T-REx-293, guo_2014, HEK293, HeLa, loayza_puch_2016
5755	66	GTG ...	VTD ...	Ribo-seq	GTG		31	sORFs_org_Human	NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2545658	81	ATG ...	MTS ...	Ribo-seq	ATG		2	sORFs_org_Human	NMD sORF	HEK293, MM1S
910435	51	GAC ...	DHA ...	Ribo-seq	GAC		1	sORFs_org_Human	NMD sORF	Jurkat
1440779	39	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	NMD sORF	HeLa
3017515	165	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF	MM1S
103122	42	CTG ...	LLW ...	Ribo-seq	CTG		12	sORFs_org_Human	NMD sORF	Flp-In_T-REx-293, guo_2014, HEK293, HeLa, LCL, loayza_puch_2016
910439	105	TAT ...	YVN ...	Ribo-seq	TAT		1	sORFs_org_Human	NMD sORF	Jurkat
5750	81	TTG ...	LPW ...	Ribo-seq	TTG		16	sORFs_org_Human	NMD sORF	guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MM1S
910437	42	TAT ...	YAA ...	Ribo-seq	TAT		1	sORFs_org_Human	NMD sORF	Jurkat
938535	294	CTG ...	LFR ...	Ribo-seq	CTG		4	sORFs_org_Human	NMD sORF	Brain, guo_2014, HEK293, HeLa
1317974	180	CTG ...	LTT ...	Ribo-seq	CTG		4	sORFs_org_Human	NMD sORF	BJ, HEK293, HeLa, MM1S

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