Transcript 3310 | MetamORF

Transcript

ID CARD

MetamORF ID

3310

ENST00000531351

Name

NDUFS3-209

Strand

Biotype

processed_transcript

Start-end positions

47579268-47581111

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:7710

Aliases

CI-30,
ENSG00000213619, HGNC:7710, NCBI:4722,
NDUFS3, OFF:NDUFS3

Chr 11

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
407356	63	GAC ...	DLT ...	Ribo-seq	GAC	moderate	1	sORFs_org_Human	ncRNA sORF	HCT116
3326	111	CTG ...	LTF ...	Ribo-seq	CTG	moderate	29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
906825	96	GAT ...	DHT ...	Ribo-seq	GAT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
407358	48	GAC ...	DVP ...	Ribo-seq	GAC	strong	1	sORFs_org_Human	ncRNA sORF	HCT116
2544137	30	GTG ...	VCR ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
3324	114	GTG ...	VLT ...	Ribo-seq	GTG	weak	28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
906821	105	TTC ...	FLR ...	Ribo-seq	TTC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
3309	33	CTG ...	LGD ...	Ribo-seq	CTG		11	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
917617	39	GCT ...	AEI ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
284949	30	ATG ...	MHS ...	Ribo-seq	ATG	weak	16	sORFs_org_Human	ncRNA sORF	Blood, Brain, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
284946	39	ATG ...	MPF ...	Ribo-seq	ATG		8	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, LCL, MM1S
3316	81	ATG ...	MWP ...	Ribo-seq	ATG		27	sORFs_org_Human	ncRNA sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3318	54	TTG ...	LES ...	Ribo-seq	TTG		22	sORFs_org_Human	ncRNA sORF	Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
101858	51	GTG ...	VDV ...	Ribo-seq	GTG	strong	10	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF
906829	78	TTC ...	FKS ...	Ribo-seq	TTC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
3322	168	GTG ...	VSC ...	Ribo-seq	GTG	weak	31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
906823	39	CAG ...	QGS ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
3330	60	TTG ...	LTA ...	Ribo-seq	TTG	moderate	19	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HEK293, HeLa, hES, HFF, MM1S, U2OS
906817	48	AGT ...	SMW ...	Ribo-seq	AGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
3314	84	ATG ...	MMW ...	Ribo-seq	ATG		26	sORFs_org_Human	ncRNA sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
906810	129	CGA ...	RPS ...	Ribo-seq	CGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
528016	39	CTG ...	LKS ...	Ribo-seq	CTG		17	sORFs_org_Human	ncRNA sORF	Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3320	45	ATG ...	MWL ...	Ribo-seq	ATG		19	sORFs_org_Human	ncRNA sORF	Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
105818	30	TTG ...	LPK ...	Ribo-seq	TTG		12	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
917613	33	ATC ...	ILP ...	Ribo-seq	ATC		1	sORFs_org_Human	ncRNA sORF	Jurkat
9434	78	GTG ...	VAH ...	Ribo-seq	GTG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
105812	42	GTG ...	VAE ...	Ribo-seq	GTG		20	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
906815	60	CAG ...	QLL ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
3312	99	CTG ...	LSD ...	Ribo-seq	CTG		26	sORFs_org_Human	ncRNA sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3328	69	CTG ...	LVD ...	Ribo-seq	CTG	moderate	23	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, U2OS
906819	120	ATC ...	IPV ...	Ribo-seq	ATC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
906831	36	AGC ...	SSG ...	Ribo-seq	AGC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat

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