Metam
ORF

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Transcript

ID CARD

MetamORF ID

96207

ID

ENST00000531189

Name

NDUFB8-208

Strand

-

Biotype

retained_intron

Start-end positions

100529043-100529879

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

GCA ...

Gene

ID

HGNC:7703

Aliases

ASHI,
CI-ASHI, ENSG00000166136, HGNC:7703,
NCBI:4714, NDUFB8, OFF:NDUFB8


Chr 10

ORFs

14 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

96206 42

GTG ...

VED ...

Ribo-seq
GTG moderate 34 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
898227 78

CCG ...

PER ...

Ribo-seq
CCG 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
480762 96

GTG ...

VAA ...

Ribo-seq
GTG 5 sORFs_org_Human
    Intronic
    sORF
BJ, Brain, HEK293T,
Jurkat
96211 69

CTG ...

LTC ...

Ribo-seq
CTG 7 sORFs_org_Human
    Intronic
    sORF
HEK293, HeLa, LCL,
MM1S
405052 45

CGT ...

RVE ...

Ribo-seq
CGT strong 2 sORFs_org_Human
    Intronic
    sORF
HCT116, Jurkat
1301445 48

CCG ...

PGS ...

Ribo-seq
CCG strong 1 sORFs_org_Human
    Intronic
    sORF
BJ
3199534 129

GGC ...

GGG ...

Ribo-seq
GGC 1 sORFs_org_Human
    Intronic
    sORF
HEK293
3303739 216

ATG ...

MAV ...

Predicted
ATG 1 Mackowiak2015
    Intronic
    sORF
96209 54

CTG ...

LRS ...

Ribo-seq
CTG 20 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
LCL, MM1S, RPE-1,
THP-1, U2OS
405054 60

AAG ...

KKY ...

Ribo-seq
AAG moderate 1 sORFs_org_Human
    Intronic
    sORF
HCT116
898225 33

GAC ...

DQG ...

Ribo-seq
GAC weak 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
405050 33

TAC ...

YEP ...

Ribo-seq
TAC strong 2 sORFs_org_Human
    Intronic
    sORF
HCT116, Jurkat
898223 117

AAG ...

KDM ...

Ribo-seq
AAG strong 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
898219 81

GAA ...

EER ...

Ribo-seq
GAA moderate 3 sORFs_org_Human
    Intronic
    sORF
HeLa, Jurkat, THP-1

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS