Transcript 96177 | MetamORF

Transcript

ID CARD

MetamORF ID

96177

ENST00000466088

Name

NDUFB8-205

Strand

Biotype

retained_intron

Start-end positions

100526049-100529862

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:7703

Aliases

ASHI,
CI-ASHI, ENSG00000166136, HGNC:7703,
NCBI:4714, NDUFB8, OFF:NDUFB8

Chr 10

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2615876	33	GGG ...	GTC ...	Ribo-seq	GGG	weak	2	sORFs_org_Human	Intronic sORF	HeLa, THP-1
1093008	48	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
405044	162	TAC ...	YNR ...	Ribo-seq	TAC	moderate	3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
1438373	42	TTG ...	LNW ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HeLa
277461	123	GTG ...	VYA ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Intronic sORF	BJ, LCL, THP-1
405038	45	TGT ...	CAG ...	Ribo-seq	TGT	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
96187	192	CTG ...	LAP ...	Ribo-seq	CTG	strong	21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
898204	141	ACA ...	TSP ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
898206	165	CCG ...	PCG ...	Ribo-seq	CCG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
405040	72	TTC ...	FMC ...	Ribo-seq	TTC	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
96176	87	CTG ...	LAF ...	Ribo-seq	CTG	moderate	20	sORFs_org_Human	Intronic sORF	Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, RPE-1, THP-1, U2OS
98312	60	GTG ...	VGD ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Intronic sORF	HEK293, HeLa
277464	135	TTG ...	LAC ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	Intronic sORF	BJ, HeLa, hES, LCL, RPE-1, THP-1
405042	90	TTC ...	FLA ...	Ribo-seq	TTC	moderate	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
96189	225	GTG ...	VTA ...	Ribo-seq	GTG		21	sORFs_org_Human	Intronic sORF	BJ, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MM1S, RPE-1, THP-1, U2OS
96179	42	ATG ...	MSC ...	Ribo-seq	ATG	moderate	20	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
96181	54	CTG ...	LFL ...	Ribo-seq	CTG	weak	25	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
96185	75	GTG ...	VWI ...	Ribo-seq	GTG	moderate	23	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
96183	147	GTG ...	VDT ...	Ribo-seq	GTG	moderate	31	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1129109	51	GTG ...	VYP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Intronic sORF	HEK293

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