Transcript 14332 | MetamORF

Transcript

ID CARD

MetamORF ID

14332

ENST00000266544

Name

NDUFA9-201

Strand

Biotype

protein_coding

Start-end positions

4649107-4694317

CDS Start-stop positions

4649127-4687108

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:7693

Aliases

CI-39k,
COQ11, ENSG00000139180, HGNC:7693,
NCBI:4704, NDUFA9, NDUFS2L,
OFF:NDUFA9, SDR22E1

Chr 12

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
14344	66	CTG ...	LMP ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
14334	93	ATG ...	MTS ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
14352	36	TTG ...	LVP ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
307359	63	TTG ...	LLW ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
14331	102	GTG ...	VIN ...	Ribo-seq	GTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, guo_2014, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
14348	57	ATG ...	MGN ...	Ribo-seq	ATG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
707344	45	GGT ...	GHQ ...	Ribo-seq	GGT		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
707338	99	ATA ...	INM ...	Ribo-seq	ATA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
111895	66	GTG ...	VTW ...	Ribo-seq	GTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, THP-1, U2OS
14338	48	TTG ...	LVP ...	Ribo-seq	TTG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, guo_2014, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
707355	117	TCC ...	SQS ...	Ribo-seq	TCC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
707346	75	GTA ...	VCI ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
707357	54	CCT ...	PPI ...	Ribo-seq	CCT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
14336	63	TTG ...	LVL ...	Ribo-seq	TTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
14346	63	ATG ...	MPM ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
707359	33	TTT ...	FCL ...	Ribo-seq	TTT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
14350	45	TTG ...	LLS ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
412933	57	CTA ...	LYP ...	Ribo-seq	CTA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
14340	87	TTG ...	LLM ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, U2OS
307361	60	CTG ...	LWL ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
707351	144	CAA ...	QWE ...	Ribo-seq	CAA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
707340	72	CCA ...	PWV ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
412931	252	TGC ...	CRT ...	Ribo-seq	TGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
707342	69	ATG ...	MWS ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
707353	138	GAA ...	EIL ...	Ribo-seq	GAA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
14342	81	ATG ...	MQL ...	Ribo-seq	ATG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, HeLa, hES, U2OS

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