Transcript 9709 | MetamORF

Transcript

ID CARD

MetamORF ID

9709

ENST00000536090

Name

NCAPD2-204

Strand

Biotype

processed_transcript

Start-end positions

6517359-6518203

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

HGNC:24305

Aliases

CAP-D2,
CNAP1, ENSG00000010292, hCAP-D2,
HGNC:24305, KIAA0159, NCAPD2,
NCBI:9918, OFF:NCAPD2

Chr 12

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
413148	210	GCC ...	AQR ...	Ribo-seq	GCC		1	sORFs_org_Human	ncRNA sORF	HCT116
106116	186	GTG ...	VGR ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
296730	51	CTG ...	LTL ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
106110	219	CTG ...	LTR ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HFF
106118	177	CTG ...	LAD ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
918765	57	GGA ...	GDP ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
918767	105	TGC ...	CSA ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
918769	93	CCC ...	PRG ...	Ribo-seq	CCC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
296722	90	CTG ...	LTL ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HeLa, hES, LCL
296728	54	ATG ...	MLT ...	Ribo-seq	ATG	moderate	11	sORFs_org_Human	ncRNA sORF	Blood, guo_2014, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
106120	162	GTG ...	VLV ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
14748	246	CTG ...	LQK ...	Ribo-seq	CTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
296720	33	CTG ...	LWD ...	Ribo-seq	CTG	weak	9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
296726	57	GTG ...	VML ...	Ribo-seq	GTG	weak	11	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
3201403	210	TTC ...	FQA ...	Ribo-seq	TTC		1	sORFs_org_Human	ncRNA sORF	HEK293
639430	30	ATG ...	MPS ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231, THP-1
9713	180	GTG ...	VLD ...	Ribo-seq	GTG	moderate	24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
9715	177	CTG ...	LDP ...	Ribo-seq	CTG	strong	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
9708	69	CTG ...	LQK ...	Ribo-seq	CTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
9711	51	CTG ...	LQC ...	Ribo-seq	CTG	weak	10	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, U2OS
106123	123	GTG ...	VTL ...	Ribo-seq	GTG		16	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
296724	84	CTG ...	LLF ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HeLa, hES, LCL
296732	45	TTG ...	LPD ...	Ribo-seq	TTG	moderate	10	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
106112	201	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
106114	198	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293

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