Transcript 2233 | MetamORF

Transcript

ID CARD

MetamORF ID

2233

ENST00000620138

Name

NAP1L4-222

Strand

Biotype

protein_coding

Start-end positions

2944431-2992377

CDS Start-stop positions

2945608-2979220

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

HGNC:7640

Aliases

ENSG00000205531,
HGNC:7640, NAP1L4, NAP2,
NCBI:4676, OFF:NAP1L4

Chr 11

ORFs

80 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1818882	42	CTG ...	LLY ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1818876	123	TTG ...	LAA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
293161	51	CTG ...	LCF ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, LCL
2241	69	CTG ...	LKS ...	Ribo-seq	CTG	weak	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
7890	45	ATG ...	MTI ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, HEK293, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
7888	39	ATT ...	ILK ...	Ribo-seq	ATT		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, LCL, MDA-MB-231, RPE-1, U2OS
282310	33	ATG ...	MSP ...	Ribo-seq	ATG	weak	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
406611	279	AGG ...	RCG ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative sORF Upstream	HCT116
7904	147	ATG ...	MTW ...	Ribo-seq	ATG		26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
100811	33	TTG ...	LKL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa
406607	105	GTG ...	VTR ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
903429	33	AGT ...	SRH ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
7906	159	ATG ...	MKR ...	Ribo-seq	ATG		26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
293175	189	CTG ...	LIP ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, RPE-1
7900	75	ATG ...	MLN ...	Ribo-seq	ATG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
1818886	36	CTG ...	LEP ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Downstream sORF	HeLa
481671	87	ATG ...	MGA ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	sORF Upstream	BJ, HEK293T, HeLa, hES, RPE-1
903427	72	CGG ...	RLK ...	Ribo-seq	CGG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1818866	45	CTG ...	LWR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
915858	69	AAC ...	NQQ ...	Ribo-seq	AAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
903436	30	GTA ...	VCS ...	Ribo-seq	GTA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
293169	159	TTG ...	LWT ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, RPE-1
282323	54	ATG ...	MRN ...	Ribo-seq	ATG		20	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
1818892	168	GTG ...	VMW ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
282315	114	ATG ...	MLL ...	Ribo-seq	ATG	moderate	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
7896	60	ATG ...	MRN ...	Ribo-seq	ATG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
293171	165	CTG ...	LRL ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, RPE-1
1818888	99	GTG ...	VVP ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1818874	96	GTG ...	VGD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
7902	129	ATG ...	MQR ...	Ribo-seq	ATG		25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
903432	45	CGG ...	RNG ...	Ribo-seq	CGG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
633562	45	TTG ...	LLE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative sORF Upstream	BJ, THP-1
1818890	165	ATG ...	MWF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1818896	207	GTG ...	VGW ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
903417	36	CGG ...	RGW ...	Ribo-seq	CGG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1818880	39	CTG ...	LYA ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2250	36	ATG ...	MQR ...	Ribo-seq	ATG		18	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
282306	33	TTG ...	LKK ...	Ribo-seq	TTG		12	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, hES, LCL, MDA-MB-231, RPE-1, U2OS
915856	51	CGG ...	RNG ...	Ribo-seq	CGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1818898	63	CTG ...	LKC ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1818864	39	GTG ...	VES ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
903421	42	TCC ...	STL ...	Ribo-seq	TCC	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
7894	39	GTG ...	VKM ...	Ribo-seq	GTG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
2248	69	ATG ...	MLN ...	Ribo-seq	ATG		25	sORFs_org_Human	InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
1818872	66	ATG ...	MAV ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2239	39	CTG ...	LVY ...	Ribo-seq	CTG	strong	24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2232	30	CTG ...	LCC ...	Ribo-seq	CTG	moderate	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
282317	135	TTG ...	LTG ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, LCL
104963	36	ATG ...	MQV ...	Ribo-seq	ATG		18	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
1818868	51	CTG ...	LTR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2246	66	TTG ...	LNQ ...	Ribo-seq	TTG		23	sORFs_org_Human	InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
7898	72	TTG ...	LNQ ...	Ribo-seq	TTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
104965	45	CTG ...	LLK ...	Ribo-seq	CTG		22	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
903415	54	GCG ...	ADS ...	Ribo-seq	GCG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
633560	42	TTG ...	LEA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Alternative sORF Upstream	BJ, HeLa, THP-1
100813	39	CTG ...	LIL ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL
7892	48	ATG ...	MMT ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
282321	33	GTG ...	VKM ...	Ribo-seq	GTG		20	sORFs_org_Human	InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, hES, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
1818878	30	ATG ...	MPI ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
903423	54	CCA ...	PKE ...	Ribo-seq	CCA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1818870	60	GTG ...	VSA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2254	66	ATG ...	MKR ...	Ribo-seq	ATG		20	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
1818894	171	CTG ...	LVM ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2237	36	TTG ...	LNP ...	Ribo-seq	TTG	moderate	18	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
903444	48	GGT ...	GDA ...	Ribo-seq	GGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
903425	66	GCC ...	ARS ...	Ribo-seq	GCC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1818900	42	TTG ...	LPQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
903440	36	GGT ...	GEM ...	Ribo-seq	GGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1818884	51	CTG ...	LHH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
903419	42	AGT ...	SPD ...	Ribo-seq	AGT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2235	63	CTG ...	LLE ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
2252	54	ATG ...	MTW ...	Ribo-seq	ATG		23	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
903438	39	GGA ...	GKK ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
7886	36	TTG ...	LKK ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, LCL, MDA-MB-231, RPE-1, U2OS
293167	150	GTG ...	VTG ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, LCL
903434	63	AAC ...	NQQ ...	Ribo-seq	AAC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
282313	108	CTG ...	LSK ...	Ribo-seq	CTG	weak	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
2256	30	ATG ...	MCS ...	Ribo-seq	ATG	moderate	22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
293173	174	TTG ...	LKV ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, RPE-1
104967	72	ATG ...	MGF ...	Ribo-seq	ATG		24	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1

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