Transcript 15158 | MetamORF

Transcript

ID CARD

MetamORF ID

15158

ENST00000551793

Name

NACA-219

Strand

Biotype

processed_transcript

Start-end positions

56713869-56725301

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

HGNC:7629

Aliases

ENSG00000196531,
HGNC:7629, NACA, NACA1,
NCBI:4666, OFF:NACA

Chr 12

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
708519	219	CCG ...	PQP ...	Ribo-seq	CCG		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
413317	165	GTA ...	VPE ...	Ribo-seq	GTA		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat
15176	177	CTG ...	LRQ ...	Ribo-seq	CTG		30	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
15166	210	CTG ...	LLQ ...	Ribo-seq	CTG		30	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
15170	147	GTG ...	VMN ...	Ribo-seq	GTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
15157	222	TTG ...	LPQ ...	Ribo-seq	TTG		31	sORFs_org_Human	ncRNA sORF	BJ, Brain, Breast, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, U2OS
15164	144	ATG ...	MNQ ...	Ribo-seq	ATG		33	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
413311	261	GGC ...	GEA ...	Ribo-seq	GGC		8	sORFs_org_Human	ncRNA sORF	BJ, Breast, HCT116, HEK293, HeLa, Jurkat, THP-1
15178	153	CTG ...	LTV ...	Ribo-seq	CTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
708528	129	ACC ...	TTQ ...	Ribo-seq	ACC		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, Jurkat, THP-1
15174	126	TTG ...	LKN ...	Ribo-seq	TTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
413313	135	CAG ...	QAT ...	Ribo-seq	CAG		6	sORFs_org_Human	ncRNA sORF	BJ, HCT116, HEK293, HeLa, Jurkat, THP-1
413309	216	CAG ...	QPQ ...	Ribo-seq	CAG		2	sORFs_org_Human	ncRNA sORF	HCT116, HEK293
708521	141	TCC ...	STQ ...	Ribo-seq	TCC		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
708523	225	GAG ...	ELP ...	Ribo-seq	GAG		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
15162	165	CTG ...	LEQ ...	Ribo-seq	CTG		30	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
15168	276	CTG ...	LHK ...	Ribo-seq	CTG		29	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
708531	93	AAC ...	NKP ...	Ribo-seq	AAC		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, Jurkat, THP-1
15172	291	TTG ...	LVP ...	Ribo-seq	TTG		30	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
413315	120	CAA ...	QAQ ...	Ribo-seq	CAA		2	sORFs_org_Human	ncRNA sORF	HCT116, HEK293
15160	273	CTG ...	LPP ...	Ribo-seq	CTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

Export data