Transcript 11555 | MetamORF

Transcript

ID CARD

MetamORF ID

11555

ENST00000454682

Name

NACA-203

Strand

Biotype

protein_coding

Start-end positions

56712428-56725542

CDS Start-stop positions

56712538-56724521

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

HGNC:7629

Aliases

ENSG00000196531,
HGNC:7629, NACA, NACA1,
NCBI:4666, OFF:NACA

Chr 12

ORFs

52 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
641804	210	CTG ...	LPA ...	Ribo-seq	CTG		8	sORFs_org_Human	sORF Upstream	HAP1, HEK293, HeLa, RPE-1, THP-1
11567	69	CTG ...	LKL ...	Ribo-seq	CTG		29	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
11554	33	ATG ...	MCR ...	Ribo-seq	ATG	weak	24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MM1S, RPE-1, U2OS
922967	30	AAC ...	NKP ...	Ribo-seq	AAC		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, Jurkat, THP-1
11559	36	ATG ...	MST ...	Ribo-seq	ATG	weak	35	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
14663	270	ATG ...	MNQ ...	Ribo-seq	ATG		35	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
14661	252	TTG ...	LKN ...	Ribo-seq	TTG		33	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1210865	237	CTG ...	LTV ...	Ribo-seq	CTG		5	sORFs_org_Human	sORF Upstream	HAP1, HEK293, HeLa, RPE-1
451853	69	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293T
11563	60	ATG ...	MKN ...	Ribo-seq	ATG		29	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, U2OS
1310415	171	AAT ...	NRI ...	Ribo-seq	AAT		1	sORFs_org_Human	Alternative sORF Upstream	HEK293
11557	57	TTG ...	LNW ...	Ribo-seq	TTG	moderate	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, guo_2014, HEK293, HEK293T, HeLa, hES, LCL
413090	165	CAA ...	QNR ...	Ribo-seq	CAA		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
641799	84	CTG ...	LHS ...	Ribo-seq	CTG		11	sORFs_org_Human	sORF Upstream	HAP1, HEK293, HeLa, hES, RPE-1, THP-1
14669	291	CTG ...	LEQ ...	Ribo-seq	CTG		33	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
922963	45	GTA ...	VKQ ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
14667	279	CTG ...	LTV ...	Ribo-seq	CTG		34	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
484830	147	CTG ...	LQQ ...	Ribo-seq	CTG		21	sORFs_org_Human	sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
14659	225	CTG ...	LFY ...	Ribo-seq	CTG		32	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
922965	180	GGT ...	GGY ...	Ribo-seq	GGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
11561	54	TTG ...	LSS ...	Ribo-seq	TTG	weak	30	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
922954	33	TTT ...	FIP ...	Ribo-seq	TTT	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, Jurkat
411364	51	GAG ...	EPC ...	Ribo-seq	GAG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HEK293, Jurkat
484827	93	CTG ...	LPP ...	Ribo-seq	CTG		19	sORFs_org_Human	Alternative sORF Upstream	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1
411376	135	TGG ...	WVT ...	Ribo-seq	TGG		8	sORFs_org_Human	sORF Upstream	BJ, Breast, HCT116, HEK293, HeLa, Jurkat, THP-1
14654	195	CTG ...	LKL ...	Ribo-seq	CTG		34	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
707818	171	GTA ...	VKQ ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
484822	75	CTG ...	LLQ ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T, HeLa
411370	66	AAT ...	NAR ...	Ribo-seq	AAT	moderate	8	sORFs_org_Human	Overlapping sORF Upstream	BJ, Breast, HCT116, HEK293, HeLa, Jurkat, THP-1
11565	63	TTG ...	LMK ...	Ribo-seq	TTG		28	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, U2OS
707821	219	AAC ...	NKP ...	Ribo-seq	AAC		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, Jurkat, THP-1
922950	66	AAC ...	NNV ...	Ribo-seq	AAC	moderate	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
922975	87	TCC ...	SLH ...	Ribo-seq	TCC		1	sORFs_org_Human	sORF Upstream	Jurkat
922969	213	GGA ...	GFH ...	Ribo-seq	GGA		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
14650	186	ATG ...	MKN ...	Ribo-seq	ATG		32	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
411374	51	CTC ...	LAR ...	Ribo-seq	CTC		1	sORFs_org_Human	Alternative sORF Upstream	HCT116
11569	63	TTG ...	LKN ...	Ribo-seq	TTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S
14665	273	GTG ...	VMN ...	Ribo-seq	GTG		34	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
922958	90	CTA ...	LES ...	Ribo-seq	CTA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
14652	189	TTG ...	LMK ...	Ribo-seq	TTG		32	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
11571	81	ATG ...	MNQ ...	Ribo-seq	ATG		31	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
1210862	180	TTG ...	LTR ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative sORF Upstream	Flp-In_T-REx-293, HAP1, HEK293, HeLa, RPE-1
411372	33	CGC ...	RHL ...	Ribo-seq	CGC		1	sORFs_org_Human	Alternative sORF Upstream	HCT116
411368	39	CAA ...	QNR ...	Ribo-seq	CAA		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
922960	126	TGT ...	CPN ...	Ribo-seq	TGT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
411362	36	TAC ...	YLH ...	Ribo-seq	TAC		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HEK293, Jurkat
108299	90	CTG ...	LTV ...	Ribo-seq	CTG		25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1
484820	102	CTG ...	LEQ ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MM1S
108301	63	GTG ...	VGH ...	Ribo-seq	GTG		27	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
484825	99	TTG ...	LVP ...	Ribo-seq	TTG		16	sORFs_org_Human	sORF Upstream	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
411378	75	TCT ...	SAT ...	Ribo-seq	TCT		4	sORFs_org_Human	Alternative sORF Upstream	BJ, HCT116, HEK293, Jurkat
108297	84	GTG ...	VMN ...	Ribo-seq	GTG		25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1

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