Transcript 3353 | MetamORF

Transcript

ID CARD

MetamORF ID

3353

ENST00000530428

Name

MTCH2-203

Strand

Biotype

protein_coding

Start-end positions

47622711-47642607

CDS Start-stop positions

-47642465

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

HGNC:17587

Aliases

ENSG00000109919,
HGNC:17587, MTCH2, NCBI:23788,
OFF:MTCH2, SLC25A50

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
483573	93	TTG ...	LGG ...	Ribo-seq	TTG		8	sORFs_org_Human	sORF	BJ, HEK293T, HeLa, loayza_puch_2016, MM1S, RPE-1
2327252	36	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	hES, MDA-MB-231
2313950	45	CTG ...	LVD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	MDA-MB-231
1511951	63	ATG ...	MYR ...	Ribo-seq	ATG		2	sORFs_org_Human	sORF	BJ, hES
906852	51	CAT ...	HLS ...	Ribo-seq	CAT		1	sORFs_org_Human	sORF	Jurkat
1820813	78	TTG ...	LCL ...	Ribo-seq	TTG		2	sORFs_org_Human	sORF	HeLa
2327250	33	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	hES, MDA-MB-231
1511953	69	CTG ...	LEM ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	BJ
906850	60	TGT ...	CGC ...	Ribo-seq	TGT		1	sORFs_org_Human	sORF	Jurkat
1820811	72	TTG ...	LSP ...	Ribo-seq	TTG		2	sORFs_org_Human	sORF	HeLa
1049460	42	TTG ...	LAE ...	Ribo-seq	TTG		5	sORFs_org_Human	sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
916155	48	CGG ...	RES ...	Ribo-seq	CGG		1	sORFs_org_Human	sORF	Jurkat
3352	42	GTG ...	VDA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	sORF	HEK293, MDA-MB-231
906848	51	GTA ...	VTH ...	Ribo-seq	GTA		1	sORFs_org_Human	sORF	Jurkat
2313952	48	TTG ...	LLV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	sORF	MDA-MB-231
8122	33	CTG ...	LWS ...	Ribo-seq	CTG		9	sORFs_org_Human	sORF	Flp-In_T-REx-293, HEK293, HeLa, hES, MDA-MB-231, RPE-1
409514	99	ATA ...	IFL ...	Ribo-seq	ATA		1	sORFs_org_Human	sORF	HCT116
916153	36	GAA ...	ELW ...	Ribo-seq	GAA		1	sORFs_org_Human	sORF	Jurkat
407377	57	CTC ...	LQS ...	Ribo-seq	CTC		1	sORFs_org_Human	sORF	HCT116
483571	69	CTG ...	LVS ...	Ribo-seq	CTG		5	sORFs_org_Human	sORF	BJ, HEK293T, HeLa, hES
3355	75	GTG ...	VTS ...	Ribo-seq	GTG		19	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
483569	54	ATG ...	MLS ...	Ribo-seq	ATG		4	sORFs_org_Human	sORF	BJ, HEK293T, loayza_puch_2016
8124	39	TTG ...	LEL ...	Ribo-seq	TTG		7	sORFs_org_Human	sORF	Flp-In_T-REx-293, HEK293, HeLa, hES, MDA-MB-231, RPE-1
8120	132	TTG ...	LFL ...	Ribo-seq	TTG		20	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS

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