Transcript 4349 | MetamORF

Transcript

ID CARD

MetamORF ID

4349

ENST00000531179

Name

MTA2-205

Strand

Biotype

retained_intron

Start-end positions

62595748-62596661

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

HGNC:7411

Aliases

ENSG00000149480,
HGNC:7411, MTA1-L1, MTA1L1,
MTA2, NCBI:9219, OFF:MTA2

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
102353	51	TTG ...	LDL ...	Ribo-seq	TTG	moderate	10	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
286413	42	CTG ...	LEE ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
4351	78	ATG ...	MPG ...	Ribo-seq	ATG	moderate	11	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
908286	42	GAA ...	EAD ...	Ribo-seq	GAA		1	sORFs_org_Human	Intronic sORF	Jurkat
4355	54	TTG ...	LKA ...	Ribo-seq	TTG		19	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
908284	36	GAC ...	DSK ...	Ribo-seq	GAC		1	sORFs_org_Human	Intronic sORF	Jurkat
286423	138	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Human	Intronic sORF	LCL
908274	135	CAG ...	QCR ...	Ribo-seq	CAG		1	sORFs_org_Human	Intronic sORF	Jurkat
4353	90	CTG ...	LLS ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
4348	42	GTG ...	VLP ...	Ribo-seq	GTG	weak	12	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, hES, LCL, MDA-MB-231, MM1S, RPE-1
908282	51	CTA ...	LSQ ...	Ribo-seq	CTA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
286419	72	GTG ...	VPP ...	Ribo-seq	GTG	moderate	10	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
908276	150	GGC ...	GPP ...	Ribo-seq	GGC		1	sORFs_org_Human	Intronic sORF	Jurkat
1317088	132	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HEK293
102355	54	CTG ...	LLD ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1, U2OS
102357	63	CTG ...	LCF ...	Ribo-seq	CTG	weak	10	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
908278	39	CAT ...	HEW ...	Ribo-seq	CAT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat

Export data