Transcript 407724

Transcript

ID CARD

MetamORF ID

407724

ENST00000278823

Name

MTA2-201

Strand

Biotype

protein_coding

Start-end positions

62593214-62601840

CDS Start-stop positions

62593875-62601450

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

HGNC:7411

Aliases

ENSG00000149480,
HGNC:7411, MTA1-L1, MTA1L1,
MTA2, NCBI:9219, OFF:MTA2

Chr 11

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
908308	63	GAG ...	EPS ...	Ribo-seq	GAG	weak	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
2315754	168	GTG ...	VPA ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	MDA-MB-231
635100	108	TTG ...	LPR ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	THP-1
1506631	99	GTG ...	VFR ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative sORF Upstream	BJ
908306	48	CGG ...	RKK ...	Ribo-seq	CGG	weak	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
529114	96	CTG ...	LEP ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
529112	81	CTG ...	LAL ...	Ribo-seq	CTG	strong	13	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407723	165	CTG ...	LRR ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	Alternative sORF Upstream	BJ, HCT116, HeLa, hES, Jurkat, MDA-MB-231, RPE-1, U2OS
529108	78	CTG ...	LAG ...	Ribo-seq	CTG	strong	12	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
529116	114	GTG ...	VGL ...	Ribo-seq	GTG	moderate	9	sORFs_org_Human	Alternative sORF Upstream	BJ, guo_2014, HeLa, hES, MDA-MB-231, RPE-1, U2OS
908312	90	CCT ...	PGS ...	Ribo-seq	CCT	strong	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
2315756	30	CTG ...	LRR ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative sORF Upstream	MDA-MB-231
529110	75	CTG ...	LAW ...	Ribo-seq	CTG	strong	12	sORFs_org_Human	Alternative sORF Upstream	BJ, guo_2014, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
908310	84	TCT ...	SGL ...	Ribo-seq	TCT	strong	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat

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