Transcript 95389 | MetamORF

Transcript

ID CARD

MetamORF ID

95389

ENST00000473427

Name

MRPS16-204

Strand

Biotype

processed_transcript

Start-end positions

73250744-73252634

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

HGNC:14048

Aliases

CGI-132,
ENSG00000182180, HGNC:14048, MRPS16,
NCBI:51021, OFF:MRPS16

Chr 10

ORFs

61 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
95407	75	GTG ...	VAA ...	Ribo-seq	GTG	moderate	21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
404571	54	TTC ...	FCV ...	Ribo-seq	TTC		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat
404569	30	TGT ...	CLF ...	Ribo-seq	TGT	weak	2	sORFs_org_Human	ncRNA sORF	HCT116, HEK293
1092689	42	ATG ...	MQK ...	Ribo-seq	ATG	weak	8	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1
1744	144	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HeLa
95405	90	CTG ...	LHQ ...	Ribo-seq	CTG	weak	20	sORFs_org_Human	ncRNA sORF	BJ, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
95419	192	TTG ...	LCC ...	Ribo-seq	TTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
1046290	45	GTG ...	VSQ ...	Ribo-seq	GTG	weak	5	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HEK293T, HeLa, loayza_puch_2016
275384	135	GTG ...	VRP ...	Ribo-seq	GTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896231	90	TCC ...	SAL ...	Ribo-seq	TCC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
95388	60	CTG ...	LLA ...	Ribo-seq	CTG	moderate	23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1
633169	42	CTG ...	LLL ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	HEK293, hES, THP-1
896233	117	CTT ...	LNH ...	Ribo-seq	CTT	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
275367	30	TTG ...	LLA ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, LCL, MDA-MB-231, RPE-1
95401	201	GTG ...	VAA ...	Ribo-seq	GTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
95391	87	CTG ...	LRR ...	Ribo-seq	CTG	moderate	32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
275362	42	CTG ...	LRD ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	ncRNA sORF	Blood, Brain, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, THP-1
95403	45	TTG ...	LWL ...	Ribo-seq	TTG	moderate	24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
95409	237	CTG ...	LGG ...	Ribo-seq	CTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896215	51	TCA ...	SQM ...	Ribo-seq	TCA	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
97445	117	TTG ...	LQV ...	Ribo-seq	TTG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896225	66	CCA ...	PIG ...	Ribo-seq	CCA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
275382	54	GTG ...	VSA ...	Ribo-seq	GTG	weak	12	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
523535	69	CTG ...	LVR ...	Ribo-seq	CTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896237	33	GCA ...	ARR ...	Ribo-seq	GCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
896235	42	CAG ...	QLL ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1295874	51	ATG ...	MIH ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, HeLa, loayza_puch_2016
97440	66	GTG ...	VRA ...	Ribo-seq	GTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HCT116, HEK293, HeLa, hES, Jurkat, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
95397	153	CTG ...	LGS ...	Ribo-seq	CTG		26	sORFs_org_Human	ncRNA sORF	Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MM1S, RPE-1, THP-1, U2OS
633176	75	GTG ...	VFV ...	Ribo-seq	GTG		11	sORFs_org_Human	ncRNA sORF	BJ, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
1718078	30	TTG ...	LDW ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	ncRNA sORF	Blood, HeLa, MDA-MB-231
95393	120	CTG ...	LHP ...	Ribo-seq	CTG	weak	32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
275386	141	TTG ...	LAV ...	Ribo-seq	TTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
97443	102	GTG ...	VFV ...	Ribo-seq	GTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896223	81	TCG ...	SAV ...	Ribo-seq	TCG	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
404575	63	GCA ...	AGS ...	Ribo-seq	GCA		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat
480548	33	CTG ...	LCL ...	Ribo-seq	CTG	weak	19	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
633171	123	TTG ...	LYR ...	Ribo-seq	TTG		5	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231, RPE-1, THP-1
275388	150	TTG ...	LYR ...	Ribo-seq	TTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
95411	84	TTG ...	LPW ...	Ribo-seq	TTG	moderate	23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
275378	39	CTG ...	LPC ...	Ribo-seq	CTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
281866	90	TTG ...	LQV ...	Ribo-seq	TTG		16	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
95395	135	TTG ...	LPN ...	Ribo-seq	TTG		29	sORFs_org_Human	ncRNA sORF	Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
1128799	234	GTG ...	VGK ...	Ribo-seq	GTG		6	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, HeLa, MM1S
95399	39	CTG ...	LLT ...	Ribo-seq	CTG	weak	22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
95423	201	TTG ...	LSF ...	Ribo-seq	TTG		20	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
523542	57	CTG ...	LVS ...	Ribo-seq	CTG	strong	12	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, MDA-MB-231, MM1S, RPE-1, U2OS
633173	114	TTG ...	LAV ...	Ribo-seq	TTG		4	sORFs_org_Human	ncRNA sORF	HEK293, RPE-1, THP-1
896228	234	GGT ...	GGC ...	Ribo-seq	GGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
275364	45	ATG ...	MLR ...	Ribo-seq	ATG	weak	13	sORFs_org_Human	ncRNA sORF	Blood, Brain, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, THP-1, U2OS
281864	108	GTG ...	VRP ...	Ribo-seq	GTG		13	sORFs_org_Human	ncRNA sORF	BJ, HAP1, HEK293, HeLa, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1
896218	192	CAC ...	HNK ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
404577	75	TGG ...	WCR ...	Ribo-seq	TGG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
404563	174	GAT ...	DGR ...	Ribo-seq	GAT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
95415	165	CTG ...	LLF ...	Ribo-seq	CTG		30	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
404566	30	CAA ...	QGR ...	Ribo-seq	CAA		1	sORFs_org_Human	ncRNA sORF	HCT116
95413	141	CTG ...	LQG ...	Ribo-seq	CTG	weak	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
404560	57	TTA ...	LAS ...	Ribo-seq	TTA	moderate	1	sORFs_org_Human	ncRNA sORF	HCT116
95417	180	TTG ...	LCP ...	Ribo-seq	TTG		29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896221	207	CGC ...	RIV ...	Ribo-seq	CGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
275369	30	ATG ...	MEK ...	Ribo-seq	ATG	strong	16	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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