Transcript 5024 | MetamORF

Transcript

ID CARD

MetamORF ID

5024

ENST00000532671

Name

MRPL49-207

Strand

Biotype

retained_intron

Start-end positions

65124725-65127363

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAT ...

Genome browsers

UCSC

Gene

HGNC:1176

Aliases

C11orf4,
ENSG00000149792, HGNC:1176, L49mt,
MRPL49, NCBI:740, NOF,
NOF1, OFF:MRPL49

Chr 11

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
408081	114	CCG ...	PLL ...	Ribo-seq	CCG	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
408077	96	ATC ...	IRK ...	Ribo-seq	ATC		1	sORFs_org_Human	Intronic sORF	HCT116
1821915	78	GTG ...	VGV ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Intronic sORF	HeLa
909381	54	AAG ...	KGY ...	Ribo-seq	AAG	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
287263	48	TTG ...	LSS ...	Ribo-seq	TTG		6	sORFs_org_Human	Intronic sORF	BJ, HEK293T, HeLa, hES, LCL, MM1S
909370	132	GAT ...	DDC ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
909374	96	CCT ...	PVT ...	Ribo-seq	CCT	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
1821919	42	CTG ...	LTP ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
5036	111	CTG ...	LLG ...	Ribo-seq	CTG	weak	30	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
909363	177	GCA ...	AQH ...	Ribo-seq	GCA		1	sORFs_org_Human	Intronic sORF	Jurkat
408073	189	ACG ...	TLS ...	Ribo-seq	ACG		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
408079	129	GAA ...	EDF ...	Ribo-seq	GAA	strong	1	sORFs_org_Human	Intronic sORF	HCT116
909365	147	AAC ...	NIP ...	Ribo-seq	AAC		1	sORFs_org_Human	Intronic sORF	Jurkat
5032	132	GTG ...	VED ...	Ribo-seq	GTG	strong	30	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1821917	33	TTG ...	LFG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
5030	144	CTG ...	LQK ...	Ribo-seq	CTG	moderate	30	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5026	69	TTG ...	LYD ...	Ribo-seq	TTG	moderate	32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
408083	69	GGT ...	GTL ...	Ribo-seq	GGT	moderate	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
909383	36	GAG ...	ELK ...	Ribo-seq	GAG	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
909367	162	CTA ...	LQG ...	Ribo-seq	CTA		1	sORFs_org_Human	Intronic sORF	Jurkat
909379	207	GGA ...	GSR ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
102719	93	CTG ...	LIC ...	Ribo-seq	CTG		8	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, MM1S
909372	87	GTG ...	VEG ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	Jurkat
408075	141	CAA ...	QPA ...	Ribo-seq	CAA		4	sORFs_org_Human	Intronic sORF	HCT116, HeLa, Jurkat, THP-1
909376	81	AAT ...	NEV ...	Ribo-seq	AAT	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
5023	180	CTG ...	LPY ...	Ribo-seq	CTG		15	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, U2OS
909385	30	AAA ...	KAW ...	Ribo-seq	AAA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
5040	75	GTG ...	VTG ...	Ribo-seq	GTG	moderate	31	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5038	108	CTG ...	LGK ...	Ribo-seq	CTG	moderate	30	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5034	120	CTG ...	LSP ...	Ribo-seq	CTG	weak	30	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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