Transcript 9141 | MetamORF

Transcript

ID CARD

MetamORF ID

9141

ENST00000462288

Name

MRPL23-207

Strand

Biotype

processed_transcript

Start-end positions

1947554-1956609

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:10322

Aliases

ENSG00000214026,
HGNC:10322, L23MRP, MRPL23,
NCBI:6150, OFF:MRPL23, RPL23L

Chr 11

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
9147	249	GTG ...	VQH ...	Ribo-seq	GTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
9140	270	GTG ...	VAA ...	Ribo-seq	GTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
917820	252	CGG ...	RVQ ...	Ribo-seq	CGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1296810	210	ATG ...	MDP ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	HEK293T, MM1S
9143	261	GTG ...	VRT ...	Ribo-seq	GTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
917824	300	AAT ...	NYL ...	Ribo-seq	AAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
409884	213	AAC ...	NVR ...	Ribo-seq	AAC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
9151	168	CTG ...	LAH ...	Ribo-seq	CTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
9149	210	GTG ...	VRI ...	Ribo-seq	GTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
9153	174	GTG ...	VQL ...	Ribo-seq	GTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1296808	219	GTG ...	VCD ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293T
9145	276	GTG ...	VPV ...	Ribo-seq	GTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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