Transcript 282905

Transcript

ID CARD

MetamORF ID

282905

ENST00000532203

Name

MRPL17-203

Strand

Biotype

protein_coding

Start-end positions

6682149-6683316

CDS Start-stop positions

-6683296

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:14053

Aliases

ENSG00000158042,
HGNC:14053, MRP-L26, MRPL17,
NCBI:63875, OFF:MRPL17, RPML26

Chr 11

ORFs

8 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
904068	138	TCT ...	SVA ...	Ribo-seq	TCT		1	sORFs_org_Human	sORF	Jurkat
1094305	66	CTG ...	LGA ...	Ribo-seq	CTG	strong	5	sORFs_org_Human	sORF	HEK293, HeLa, MDA-MB-231
1316013	141	CTG ...	LQR ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	sORF	HEK293, HeLa, MDA-MB-231, MM1S
1316011	126	ATG ...	MAA ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	sORF	HEK293, MDA-MB-231, MM1S
282904	84	ATG ...	MGA ...	Ribo-seq	ATG		4	sORFs_org_Human	sORF	BJ, HEK293T, LCL, MM1S
904074	219	CAT ...	HAA ...	Ribo-seq	CAT		5	sORFs_org_Human	sORF	Breast, HEK293, HeLa, Jurkat, THP-1
904070	183	CCG ...	PRI ...	Ribo-seq	CCG		1	sORFs_org_Human	sORF	Jurkat
1316015	165	TTG ...	LET ...	Ribo-seq	TTG	strong	3	sORFs_org_Human	sORF	HEK293, MDA-MB-231, MM1S

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