Transcript 2496 | MetamORF

Transcript

ID CARD

MetamORF ID

2496

ENST00000529958

Name

MRPL17-202

Strand

Biotype

retained_intron

Start-end positions

6681951-6683296

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

HGNC:14053

Aliases

ENSG00000158042,
HGNC:14053, MRP-L26, MRPL17,
NCBI:63875, OFF:MRPL17, RPML26

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2495	75	TTG ...	LRQ ...	Ribo-seq	TTG	moderate	28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2510	207	CTG ...	LQI ...	Ribo-seq	CTG	moderate	32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2506	165	GTG ...	VIE ...	Ribo-seq	GTG	moderate	28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2502	126	CTG ...	LPR ...	Ribo-seq	CTG	weak	29	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1819121	36	ATG ...	MIT ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
2516	276	TTG ...	LIP ...	Ribo-seq	TTG	moderate	32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2514	264	CTG ...	LFQ ...	Ribo-seq	CTG	moderate	32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2508	186	TTG ...	LDR ...	Ribo-seq	TTG	strong	30	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1819125	138	CTG ...	LKS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
1819117	75	CTG ...	LRR ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
633800	186	TTG ...	LPP ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, RPE-1, THP-1
1819123	129	CTG ...	LQP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
2512	252	CTG ...	LAP ...	Ribo-seq	CTG	strong	32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1819119	93	TTG ...	LEH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
2504	132	CTG ...	LPL ...	Ribo-seq	CTG	weak	29	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2500	87	CTG ...	LLQ ...	Ribo-seq	CTG	weak	28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1819127	144	CTG ...	LDL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
2498	84	CTG ...	LQG ...	Ribo-seq	CTG	weak	27	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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