Transcript 6299 | MetamORF

Transcript

ID CARD

MetamORF ID

6299

ENST00000393241

Name

MRE11-203

Strand

Biotype

protein_coding

Start-end positions

94419878-94493848

CDS Start-stop positions

94420125-94492801

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

HGNC:7230

Aliases

ATLD,
ENSG00000020922, HGNC:7230, MRE11,
MRE11A, NCBI:4361, OFF:MRE11

Chr 11

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1728429	60	GTG ...	VVQ ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
6303	72	TTG ...	LKM ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
1049884	33	ATG ...	MKK ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, MDA-MB-231
2320581	51	ATG ...	MKI ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
295807	195	ATG ...	MTL ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
1733145	99	ATG ...	MPS ...	Ribo-seq	ATG		5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231
2330006	96	ATG ...	MAT ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
295815	150	TTG ...	LKK ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
1131377	33	TTG ...	LVC ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
289749	30	ATG ...	MQS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
295817	156	TTG ...	LRL ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
6298	63	CTG ...	LNG ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
1728442	60	GTG ...	VEV ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
295803	186	ATG ...	MIA ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
295805	189	CTG ...	LMI ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
295811	132	ATG ...	MLN ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
1728438	39	GTG ...	VFF ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
289737	84	TTG ...	LKK ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
1728440	51	TTG ...	LNL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2330008	36	ATG ...	MHL ...	Ribo-seq	ATG		1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
289732	30	ATG ...	MSL ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
1728436	36	TTG ...	LMP ...	Ribo-seq	TTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, hES, MDA-MB-231, RPE-1
295813	138	TTG ...	LKM ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
295809	129	CTG ...	LNG ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
289739	30	ATG ...	MRT ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1728448	39	ATG ...	MKG ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1733147	102	TTG ...	LMP ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231
1048531	30	ATG ...	MKK ...	Ribo-seq	ATG		4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, hES, MDA-MB-231
6301	66	ATG ...	MLN ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
1131380	36	ATG ...	MLV ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
295801	129	GTG ...	VEE ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
1728434	33	ATG ...	MPS ...	Ribo-seq	ATG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, hES, MDA-MB-231, RPE-1

Export data