Transcript 847 | MetamORF

Transcript

ID CARD

MetamORF ID

847

ENST00000369077

Name

MCMBP-202

Strand

Biotype

protein_coding

Start-end positions

119831197-119872849

CDS Start-stop positions

119831474-119872584

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

HGNC:25782

Aliases

C10orf119,
ENSG00000197771, FLJ13081, HGNC:25782,
MCM-BP, MCMBP, NCBI:79892,
OFF:MCMBP

Chr 10

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1720488	153	TTG ...	LFQ ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
405869	108	ATG ...	MTI ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HCT116, hES, MDA-MB-231, RPE-1
1129599	90	ATG ...	MKG ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, MDA-MB-231
2305909	90	ATG ...	MPF ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
2305907	66	CTG ...	LLN ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
481153	84	CTG ...	LSF ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, hES, MDA-MB-231, RPE-1
1093426	132	ATG ...	MTL ...	Ribo-seq	ATG		6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
405871	126	AGA ...	RGV ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1296395	90	TTG ...	LTL ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293T, hES, MDA-MB-231
1501882	111	ATG ...	MMT ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, MDA-MB-231, RPE-1
480969	33	ATG ...	MEL ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1093432	186	ATG ...	MLM ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
2305902	114	ATG ...	MTS ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1501884	117	ATG ...	MKM ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, MDA-MB-231, RPE-1
481151	63	ATG ...	MKR ...	Ribo-seq	ATG		7	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1
1501866	87	CTG ...	LMI ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231
1093430	180	ATG ...	MQT ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231
1501864	84	ATG ...	MIF ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231
98855	75	ATG ...	MAE ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2305911	105	TTG ...	LGS ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
405867	90	AGC ...	SPI ...	Ribo-seq	AGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
480971	45	TTG ...	LAQ ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
481144	126	TTG ...	LWK ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, MDA-MB-231
481147	87	GTG ...	VVA ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231
1817549	63	ATG ...	MEM ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
846	54	ATG ...	MRL ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1129601	93	ATG ...	MMK ...	Ribo-seq	ATG		6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1501879	66	ATG ...	MQV ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
1501877	60	GTG ...	VPD ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
278742	57	GTG ...	VWG ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
98901	33	ATG ...	MVW ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1093428	138	TTG ...	LKM ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, MDA-MB-231
2305905	63	CTG ...	LNT ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
278727	48	ATG ...	MTF ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1720490	186	CTG ...	LPA ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
481142	90	CTG ...	LLM ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, MDA-MB-231

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