Transcript 97894 | MetamORF

Transcript

ID CARD

MetamORF ID

97894

ENST00000467521

Name

MARCH5-203

Strand

Biotype

processed_transcript

Start-end positions

92308478-92349775

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

HGNC:26025

Aliases

ENSG00000198060,
FLJ20445, HGNC:26025, MARCH-V,
MARCH5, MITOL, NCBI:54708,
OFF:MARCH5, RNF153

Chr 10

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
897307	141	GGA ...	GNS ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
276527	39	TTG ...	LLL ...	Ribo-seq	TTG	moderate	19	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
631084	63	ATG ...	MQV ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231, RPE-1, THP-1
1403063	159	GTG ...	VDE ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, HFF
897311	117	TGT ...	CPQ ...	Ribo-seq	TGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
897313	102	GCT ...	AEY ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
97893	222	GTG ...	VRP ...	Ribo-seq	GTG		7	sORFs_org_Human	ncRNA sORF	Brain, HEK293, HeLa, HFF, RPE-1
897305	180	CAG ...	QAC ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
631088	39	ATG ...	MGS ...	Ribo-seq	ATG	strong	5	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231, RPE-1, THP-1
897300	45	TTT ...	FVL ...	Ribo-seq	TTT	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
1403069	168	CTG ...	LIL ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
97900	234	CTG ...	LDV ...	Ribo-seq	CTG		11	sORFs_org_Human	ncRNA sORF	Brain, HEK293, HeLa, hES, HFF, RPE-1, U2OS
276531	30	ATG ...	MKM ...	Ribo-seq	ATG	weak	20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
276539	30	TTG ...	LDF ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	ncRNA sORF	Blood, Brain, HEK293, LCL, MDA-MB-231, RPE-1
2300284	66	ATG ...	MKS ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231
276529	33	CTG ...	LMK ...	Ribo-seq	CTG	weak	21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
897317	90	ATA ...	IVF ...	Ribo-seq	ATA		1	sORFs_org_Human	ncRNA sORF	Jurkat
281371	63	CTG ...	LIK ...	Ribo-seq	CTG		11	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MM1S
631086	57	GTG ...	VQR ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1, THP-1
1816738	48	ATG ...	MCL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	ncRNA sORF	HeLa, MDA-MB-231
631082	75	ATG ...	MGE ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1, THP-1
897309	123	GTG ...	VAC ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	Jurkat
897303	195	ACA ...	TKW ...	Ribo-seq	ACA		1	sORFs_org_Human	ncRNA sORF	Jurkat

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