Transcript 10123 | MetamORF

Transcript

ID CARD

MetamORF ID

10123

ENST00000536844

Name

M6PR-202

Strand

Biotype

protein_coding

Start-end positions

8940364-8949761

CDS Start-stop positions

8941818-8946404

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

HGNC:6752

Aliases

CD-M6PR,
CD-MPR, ENSG00000003056, HGNC:6752,
M6PR, NCBI:4074, OFF:M6PR

Chr 12

ORFs

49 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
112446	162	CTG ...	LGI ...	Ribo-seq	CTG		27	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
112444	153	CTG ...	LSF ...	Ribo-seq	CTG		27	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
708172	45	TCA ...	STR ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
309106	213	CTG ...	LRP ...	Ribo-seq	CTG		25	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
1442782	129	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF Upstream	HeLa
106487	102	CTG ...	LLE ...	Ribo-seq	CTG	weak	28	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
410364	45	GCA ...	ADR ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
297255	96	CTG ...	LAS ...	Ribo-seq	CTG	strong	17	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
639814	30	CTG ...	LGP ...	Ribo-seq	CTG	strong	8	sORFs_org_Human	sORF Upstream	BJ, HEK293, HeLa, hES, MM1S, RPE-1, THP-1
919254	30	GCC ...	ACS ...	Ribo-seq	GCC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
919276	33	GAC ...	DCY ...	Ribo-seq	GAC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
10125	42	ATG ...	MTT ...	Ribo-seq	ATG	moderate	22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
297234	84	CTG ...	LWQ ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MM1S, RPE-1, THP-1, U2OS
919268	60	ACA ...	TLL ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
3201488	54	CTC ...	LTS ...	Ribo-seq	CTC		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
410366	51	ATC ...	ILA ...	Ribo-seq	ATC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
919266	63	TCA ...	STR ...	Ribo-seq	TCA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
536500	144	CTG ...	LFP ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HeLa, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
919274	39	AGA ...	RRK ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
919270	102	CAT ...	HTS ...	Ribo-seq	CAT	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
10127	48	ATG ...	MNM ...	Ribo-seq	ATG	moderate	23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
708174	135	AGT ...	SFP ...	Ribo-seq	AGT		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
297241	69	CTG ...	LAT ...	Ribo-seq	CTG	strong	21	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
919278	45	GCT ...	AGG ...	Ribo-seq	GCT	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
10122	30	GTG ...	VAR ...	Ribo-seq	GTG	strong	23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
919280	78	AGT ...	SFP ...	Ribo-seq	AGT		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
708170	36	CTC ...	LTS ...	Ribo-seq	CTC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
297239	54	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
297247	132	TTG ...	LRA ...	Ribo-seq	TTG	moderate	21	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
410368	75	GGG ...	GTG ...	Ribo-seq	GGG	weak	1	sORFs_org_Human	Alternative sORF Upstream	HCT116
536498	126	GTG ...	VGH ...	Ribo-seq	GTG	strong	14	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
919272	129	AGA ...	RAL ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
919258	33	CAC ...	HPS ...	Ribo-seq	CAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1442780	105	CTG ...	LGI ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative sORF Upstream	HeLa
919283	168	TGG ...	WDR ...	Ribo-seq	TGG		2	sORFs_org_Human	Alternative sORF Upstream	HEK293, Jurkat
536493	30	TTG ...	LAT ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative sORF Upstream	BJ, HAP1, HEK293, HeLa, hES, Jurkat, MM1S, RPE-1, THP-1, U2OS
297251	36	CTG ...	LDC ...	Ribo-seq	CTG	strong	24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
708176	225	TGG ...	WDR ...	Ribo-seq	TGG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, Jurkat
297245	123	CTG ...	LWA ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
297243	60	GTG ...	VPG ...	Ribo-seq	GTG	moderate	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
919260	63	TGC ...	CSG ...	Ribo-seq	TGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
297249	48	CTG ...	LAD ...	Ribo-seq	CTG	strong	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
410370	48	TGG ...	WPL ...	Ribo-seq	TGG	weak	5	sORFs_org_Human	sORF Upstream	BJ, HCT116, HEK293, Jurkat
919264	36	ACC ...	TTV ...	Ribo-seq	ACC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
106485	99	CTG ...	LED ...	Ribo-seq	CTG	moderate	28	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
919262	81	TGG ...	WQG ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
10129	51	GTG ...	VMN ...	Ribo-seq	GTG	moderate	26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
3020123	213	ATG ...	MVL ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	Alternative sORF Upstream	MM1S
536495	42	CTG ...	LKL ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	sORF Upstream	BJ, HEK293, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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