Transcript 1509 | MetamORF

Transcript

ID CARD

MetamORF ID

1509

ENST00000456827

Name

LIPA-205

Strand

Biotype

protein_coding

Start-end positions

89213575-89252039

CDS Start-stop positions

89214828-89228279

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:6617

Aliases

CESD,
ENSG00000107798, HGNC:6617, LAL,
LIPA, NCBI:3988, OFF:LIPA

Chr 10

ORFs

78 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
276173	57	TTG ...	LPW ...	Ribo-seq	TTG	weak	12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, Monocyte, RPE-1, U2OS
901816	132	TGG ...	WAT ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1511	126	CTG ...	LCK ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1
934255	33	TTG ...	LGP ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, MDA-MB-231, Monocyte, RPE-1
3199474	69	GGG ...	GSI ...	Ribo-seq	GGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
100166	159	ATG ...	MYI ...	Ribo-seq	ATG		16	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1
97815	66	CTG ...	LAC ...	Ribo-seq	CTG	moderate	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
1296035	279	TTG ...	LSS ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293T, HeLa, Monocyte
901812	81	TTT ...	FLR ...	Ribo-seq	TTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
897120	42	TGG ...	WQN ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1296033	264	ATG ...	MAC ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293T, HeLa, Monocyte
1508	69	TTG ...	LTG ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1
97817	84	CTG ...	LER ...	Ribo-seq	CTG	strong	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
1513	135	CTG ...	LEL ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1
897097	33	ACT ...	TDS ...	Ribo-seq	ACT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1515	138	CTG ...	LLE ...	Ribo-seq	CTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1
276171	45	CTG ...	LWL ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	InCDS Overlapping sORF	Brain, HEK293, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1, U2OS
95802	42	CTG ...	LEL ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
480654	48	CTG ...	LAL ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
100161	96	CTG ...	LLN ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1
276169	39	TTG ...	LET ...	Ribo-seq	TTG	moderate	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, guo_2014, HEK293, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
1503026	210	ATG ...	MLF ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, Monocyte, RPE-1
276164	36	CTG ...	LWK ...	Ribo-seq	CTG	moderate	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
95806	48	ATG ...	MRW ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, MDA-MB-231, Monocyte, RPE-1
897103	129	TCC ...	SSH ...	Ribo-seq	TCC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
897127	30	CAA ...	QQQ ...	Ribo-seq	CAA	weak	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
897108	285	GGA ...	GCI ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
897110	39	AGT ...	SGW ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
97813	33	TTG ...	LQM ...	Ribo-seq	TTG	moderate	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
276146	87	ATG ...	MRA ...	Ribo-seq	ATG	weak	14	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1
631019	30	ATG ...	MWV ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, Monocyte, RPE-1, THP-1
897114	111	AGA ...	RIS ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
276155	33	CTG ...	LCK ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1
276160	66	ATG ...	MYI ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
897139	36	CTC ...	LET ...	Ribo-seq	CTC		2	sORFs_org_Human	Alternative sORF Upstream	HEK293, Jurkat
897093	75	CGG ...	RNG ...	Ribo-seq	CGG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2091749	39	ATG ...	MPL ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231, Monocyte, RPE-1
281295	207	CTG ...	LFS ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, LCL, Monocyte, RPE-1
281293	186	ATG ...	MYL ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1
897125	195	CTG ...	LML ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat, Monocyte
1499991	60	TTG ...	LTS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, Monocyte, RPE-1
276153	48	TTG ...	LTG ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, Monocyte, RPE-1
2632723	135	GTG ...	VSD ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Monocyte, RPE-1
276179	45	GTG ...	VDG ...	Ribo-seq	GTG	moderate	15	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
95798	63	CTG ...	LQS ...	Ribo-seq	CTG	weak	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
276158	45	CTG ...	LLE ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
897095	102	CCA ...	PTW ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2632729	156	ATG ...	MML ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Monocyte
2632727	153	ATG ...	MLS ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Monocyte
897101	45	CGT ...	RQY ...	Ribo-seq	CGT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
276166	63	TTG ...	LHS ...	Ribo-seq	TTG	weak	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
281297	72	ATG ...	MNS ...	Ribo-seq	ATG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1
1133776	75	CTG ...	LLN ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, hES, HFF, MDA-MB-231, Monocyte, RPE-1
3199476	75	TGC ...	CLC ...	Ribo-seq	TGC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
897116	39	AAG ...	KCI ...	Ribo-seq	AAG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
897123	171	TGG ...	WAT ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
276162	48	GTG ...	VEI ...	Ribo-seq	GTG	moderate	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, U2OS
97819	81	GTG ...	VAG ...	Ribo-seq	GTG	strong	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
276177	51	CTG ...	LAK ...	Ribo-seq	CTG	strong	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, Monocyte, RPE-1, U2OS
404781	42	CTG ...	LRL ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative sORF Upstream	BJ, HCT116, HEK293, HEK293T, HeLa, hES, Jurkat, MM1S, RPE-1, THP-1, U2OS
2632505	198	TTG ...	LLM ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Monocyte
1499999	33	GTG ...	VPR ...	Ribo-seq	GTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, HFF, MDA-MB-231, Monocyte, RPE-1
897135	243	GTA ...	VTG ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
524136	48	CTG ...	LGH ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HEK293T, HeLa, hES, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
95800	72	TTG ...	LCR ...	Ribo-seq	TTG	weak	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
897106	54	CAC ...	HIL ...	Ribo-seq	CAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
631022	51	ATG ...	MMR ...	Ribo-seq	ATG	moderate	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, Jurkat, MDA-MB-231, Monocyte, RPE-1, THP-1
2632502	192	ATG ...	MLV ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Monocyte
1296030	225	TTG ...	LPT ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293T, Monocyte
100159	54	GTG ...	VPR ...	Ribo-seq	GTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1
897131	234	TCA ...	SQT ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
95804	33	ATG ...	MTY ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, Monocyte, RPE-1, THP-1
2632725	138	TTG ...	LVS ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Monocyte
897129	39	AAA ...	KPC ...	Ribo-seq	AAA	weak	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
897118	69	AAC ...	NWP ...	Ribo-seq	AAC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
276175	87	CTG ...	LSW ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1, U2OS
901810	51	TTA ...	LRT ...	Ribo-seq	TTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2632738	234	ATG ...	MFI ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Monocyte

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