Transcript 4439 | MetamORF

Transcript

ID CARD

MetamORF ID

4439

ENST00000532208

Name

LBHD1-210

Strand

Biotype

protein_coding

Start-end positions

62662848-62671540

CDS Start-stop positions

62663129-62670031

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

HGNC:28351

Aliases

C11orf48,
ENSG00000162194, HGNC:28351, LBHD1,
MGC2477, NCBI:79081, OFF:LBHD1

Chr 11

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4441	51	GTG ...	VID ...	Ribo-seq	GTG		29	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
8467	300	GTG ...	VLN ...	Ribo-seq	GTG		27	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
8463	279	CTG ...	LRH ...	Ribo-seq	CTG		28	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4449	96	GTG ...	VLN ...	Ribo-seq	GTG		28	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
908394	102	CCT ...	PSK ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
409606	276	AGG ...	RHR ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HCT116
916418	237	ATC ...	ITR ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
8457	240	CTG ...	LIT ...	Ribo-seq	CTG		27	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407753	45	CAC ...	HSS ...	Ribo-seq	CAC	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HCT116
4438	36	CTG ...	LIT ...	Ribo-seq	CTG		26	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
4453	126	CTG ...	LKK ...	Ribo-seq	CTG		29	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
8459	255	GTG ...	VID ...	Ribo-seq	GTG		28	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4447	93	TTG ...	LNR ...	Ribo-seq	TTG		30	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
8465	297	TTG ...	LNR ...	Ribo-seq	TTG		28	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
8455	183	CTG ...	LSG ...	Ribo-seq	CTG		29	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4445	75	CTG ...	LRH ...	Ribo-seq	CTG		30	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407751	69	CTC ...	LKR ...	Ribo-seq	CTC	weak	1	sORFs_org_Human	Alternative Downstream sORF	HCT116
4443	63	GTG ...	VVG ...	Ribo-seq	GTG		29	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
8461	267	GTG ...	VVG ...	Ribo-seq	GTG		28	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
916416	174	AAG ...	KKR ...	Ribo-seq	AAG		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
908396	33	ATC ...	ITR ...	Ribo-seq	ATC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
286534	51	GTG ...	VNH ...	Ribo-seq	GTG	weak	18	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
4451	114	CTG ...	LFK ...	Ribo-seq	CTG		29	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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