Transcript 2531 | MetamORF

Transcript

ID CARD

MetamORF ID

2531

ENST00000527431

Name

IPO7-202

Strand

Biotype

protein_coding

Start-end positions

9384653-9414353

CDS Start-stop positions

9408506-

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

HGNC:9852

Aliases

ENSG00000205339,
HGNC:9852, Imp7, IPO7,
NCBI:10527, OFF:IPO7, RANBP7

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
406739	162	CAT ...	HVR ...	Ribo-seq	CAT		6	sORFs_org_Human	sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
1301553	129	AGT ...	SST ...	Ribo-seq	AGT		1	sORFs_org_Human	sORF	BJ
283009	54	TTG ...	LWT ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	sORF	HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1
2533	48	CTG ...	LDC ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
481771	57	ATG ...	MCA ...	Ribo-seq	ATG	weak	21	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406741	141	TAT ...	YSW ...	Ribo-seq	TAT		7	sORFs_org_Human	sORF	BJ, HCT116, HEK293, HeLa, Jurkat, THP-1
481773	48	GTG ...	VSG ...	Ribo-seq	GTG	moderate	21	sORFs_org_Human	sORF	BJ, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2803488	93	CTG ...	LRW ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HeLa, RPE-1
283004	81	ATG ...	MII ...	Ribo-seq	ATG	moderate	12	sORFs_org_Human	sORF	Brain, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
2530	45	TTG ...	LYS ...	Ribo-seq	TTG	weak	9	sORFs_org_Human	sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
1723220	84	CTG ...	LIE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	sORF	Blood, HEK293, HeLa, MDA-MB-231
1204670	30	TTG ...	LPL ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	sORF	Blood, HAP1, hES, MDA-MB-231, Monocyte, RPE-1
633829	51	TTG ...	LLA ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	sORF	hES, MDA-MB-231, RPE-1, THP-1
633831	48	TTG ...	LAR ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	sORF	hES, MDA-MB-231, Monocyte, RPE-1, THP-1
633825	159	GTG ...	VRS ...	Ribo-seq	GTG		9	sORFs_org_Human	sORF	BJ, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
2681902	108	TTG ...	LTE ...	Ribo-seq	TTG		2	sORFs_org_Human	sORF	RPE-1
283007	60	CTG ...	LPL ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	sORF	HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
283011	42	TTG ...	LAF ...	Ribo-seq	TTG	strong	11	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1, U2OS

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