Transcript 94439 | MetamORF

Transcript

ID CARD

MetamORF ID

94439

ENST00000482091

Name

IDI1-204

Strand

Biotype

retained_intron

Start-end positions

1042677-1048935

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

HGNC:5387

Aliases

ENSG00000067064,
HGNC:5387, IDI1, NCBI:3422,
OFF:IDI1

Chr 10

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
892894	150	CAC ...	HLD ...	Ribo-seq	CAC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
892876	81	TTT ...	FSV ...	Ribo-seq	TTT		1	sORFs_org_Human	Intronic sORF	Jurkat
892898	123	CTG ...	LWP ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	Jurkat
272556	51	ATG ...	MKM ...	Ribo-seq	ATG	weak	20	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
403877	66	TGT ...	CVS ...	Ribo-seq	TGT	strong	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
94441	33	TTG ...	LEL ...	Ribo-seq	TTG	strong	22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
190172	51	CTG ...	LNE ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	Intronic sORF	Brain, HEK293, HeLa
892892	99	TCG ...	STS ...	Ribo-seq	TCG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
94445	123	CTG ...	LAE ...	Ribo-seq	CTG	moderate	24	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
892896	162	ATA ...	INT ...	Ribo-seq	ATA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
892878	123	GAG ...	ELL ...	Ribo-seq	GAG		1	sORFs_org_Human	Intronic sORF	Jurkat
1715662	54	GTG ...	VLK ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Intronic sORF	Blood, HeLa
892888	36	GGT ...	GST ...	Ribo-seq	GGT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
403871	96	TTA ...	LLH ...	Ribo-seq	TTA		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
892890	93	AGC ...	SNR ...	Ribo-seq	AGC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
892874	75	GTC ...	VFL ...	Ribo-seq	GTC		1	sORFs_org_Human	Intronic sORF	Jurkat
403875	72	GAG ...	ETK ...	Ribo-seq	GAG	moderate	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
403873	60	AAT ...	NCH ...	Ribo-seq	AAT	moderate	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
892872	30	TCA ...	SSI ...	Ribo-seq	TCA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
272558	54	TTG ...	LMK ...	Ribo-seq	TTG	weak	20	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
272551	66	TTG ...	LIC ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	HEK293, HeLa, LCL
892870	39	TGG ...	WSE ...	Ribo-seq	TGG		1	sORFs_org_Human	Intronic sORF	Jurkat
1132505	45	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HEK293
94438	93	TTG ...	LHR ...	Ribo-seq	TTG		22	sORFs_org_Human	Intronic sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, RPE-1, THP-1
94443	45	ATG ...	MTI ...	Ribo-seq	ATG	moderate	22	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
403879	117	GAG ...	EMC ...	Ribo-seq	GAG	moderate	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat

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