Transcript 95834 | MetamORF

Transcript

ID CARD

MetamORF ID

95834

ENST00000478361

Name

IDE-206

Strand

Biotype

nonsense_mediated_decay

Start-end positions

92474472-92574067

CDS Start-stop positions

92559128-92574019

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

HGNC:5381

Aliases

ENSG00000119912,
HGNC:5381, IDE, NCBI:3416,
OFF:IDE

Chr 10

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
897369	39	AAA ...	KSW ...	Ribo-seq	AAA	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
97912	69	CTG ...	LEE ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
897364	33	CTC ...	LDK ...	Ribo-seq	CTC		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
276576	57	GTG ...	VGR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Downstream NMD sORF	HeLa, LCL, MDA-MB-231
3199491	147	GCT ...	AFR ...	Ribo-seq	GCT		1	sORFs_org_Human	Downstream NMD sORF	HEK293
897377	75	GAG ...	ENK ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
897387	99	CGG ...	RYR ...	Ribo-seq	CGG		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
97918	99	GTG ...	VVK ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
897371	180	ATA ...	IPD ...	Ribo-seq	ATA		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
95838	57	TTG ...	LPE ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, HeLa, hES, MDA-MB-231, THP-1
897385	93	CGG ...	RLA ...	Ribo-seq	CGG		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
95836	36	CTG ...	LNT ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, hES, MDA-MB-231
1982964	36	GTG ...	VDL ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa, hES
97920	102	CTG ...	LVV ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
276570	72	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	LCL
97915	192	GTG ...	VTF ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
95833	90	GTG ...	VLT ...	Ribo-seq	GTG		14	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
276584	87	ATG ...	MLQ ...	Ribo-seq	ATG		1	sORFs_org_Human	Downstream NMD sORF	LCL
897381	234	CGT ...	RGF ...	Ribo-seq	CGT		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, Jurkat
276578	60	TTG ...	LVG ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Downstream NMD sORF	HeLa, LCL, MDA-MB-231
524198	66	CTG ...	LPS ...	Ribo-seq	CTG		5	sORFs_org_Human	InCDS NMD Overlapping sORF	HEK293, RPE-1, U2OS
276582	84	TTG ...	LQA ...	Ribo-seq	TTG		2	sORFs_org_Human	Downstream NMD sORF	LCL, MDA-MB-231
897367	114	GAA ...	EDI ...	Ribo-seq	GAA		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
1133858	30	CTG ...	LPP ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS NMD Overlapping sORF	HEK293, hES, MM1S
97922	111	TTG ...	LTN ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
276580	63	TTG ...	LLV ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Downstream NMD sORF	LCL, MDA-MB-231
1046534	102	TTG ...	LHM ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative Downstream NMD sORF	guo_2014, HEK293, HeLa, hES
1816745	57	ATG ...	MFH ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa, hES, MDA-MB-231
524200	78	CTG ...	LHP ...	Ribo-seq	CTG		5	sORFs_org_Human	InCDS NMD Overlapping sORF	HEK293, RPE-1, U2OS
404807	66	GAA ...	EGP ...	Ribo-seq	GAA		2	sORFs_org_Human	Alternative Downstream NMD sORF	HCT116, Jurkat
276572	75	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	LCL
276574	78	ATG ...	MLL ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, LCL

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