Transcript 1208 | MetamORF

Transcript

ID CARD

MetamORF ID

1208

ENST00000490442

Name

HNRNPH3-210

Strand

Biotype

processed_transcript

Start-end positions

68338340-68342269

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTA ...

Genome browsers

UCSC

Gene

HGNC:5043

Aliases

2H9,
ENSG00000096746, HGNC:5043, HNRNPH3,
HNRPH3, NCBI:3189, OFF:HNRNPH3

Chr 10

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
404398	78	TAT ...	YGA ...	Ribo-seq	TAT		1	sORFs_org_Human	ncRNA sORF	HCT116
95025	75	GTG ...	VKS ...	Ribo-seq	GTG	moderate	33	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
95023	99	TTG ...	LRS ...	Ribo-seq	TTG	moderate	35	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
95027	57	ATG ...	MIH ...	Ribo-seq	ATG	weak	33	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
404400	60	AGT ...	SMY ...	Ribo-seq	AGT		1	sORFs_org_Human	ncRNA sORF	HCT116
95029	135	TTG ...	LLG ...	Ribo-seq	TTG		29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
895423	120	CCG ...	PGP ...	Ribo-seq	CCG		1	sORFs_org_Human	ncRNA sORF	Jurkat
895416	60	TTT ...	FMI ...	Ribo-seq	TTT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
1207	228	TTG ...	LPF ...	Ribo-seq	TTG		29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
895418	42	TCC ...	STK ...	Ribo-seq	TCC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
95031	132	CTG ...	LGQ ...	Ribo-seq	CTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
895420	45	GAA ...	EDC ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat

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