Transcript 406060

Transcript

ID CARD

MetamORF ID

406060

ENST00000461310

Name

HNRNPH3-203

Strand

Biotype

processed_transcript

Start-end positions

68331721-68339546

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAC ...

Genome browsers

UCSC

Gene

HGNC:5043

Aliases

2H9,
ENSG00000096746, HGNC:5043, HNRNPH3,
HNRPH3, NCBI:3189, OFF:HNRNPH3

Chr 10

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1309817	171	GGG ...	GTV ...	Ribo-seq	GGG		1	sORFs_org_Human	ncRNA sORF	HEK293
406064	105	GGT ...	GIL ...	Ribo-seq	GGT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
901363	174	GAT ...	DGT ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
901365	135	AGC ...	SKE ...	Ribo-seq	AGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
480370	99	GTG ...	VLR ...	Ribo-seq	GTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
1201902	135	TTG ...	LLV ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HAP1, HEK293
1402469	255	GTG ...	VPP ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
406062	186	AAT ...	NDA ...	Ribo-seq	AAT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
406059	210	TGG ...	WVM ...	Ribo-seq	TGG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
480372	96	CTG ...	LRS ...	Ribo-seq	CTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
901360	198	CAT ...	HNG ...	Ribo-seq	CAT		5	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, Jurkat, THP-1
901367	123	ATA ...	IVQ ...	Ribo-seq	ATA		1	sORFs_org_Human	ncRNA sORF	Jurkat

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