Transcript 97078 | MetamORF

Transcript

ID CARD

MetamORF ID

97078

ENST00000354695

Name

HNRNPH3-202

Strand

Biotype

protein_coding

Start-end positions

68332122-68342272

CDS Start-stop positions

68337222-68342054

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

HGNC:5043

Aliases

2H9,
ENSG00000096746, HGNC:5043, HNRNPH3,
HNRPH3, NCBI:3189, OFF:HNRNPH3

Chr 10

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
895389	81	GAG ...	ERY ...	Ribo-seq	GAG	moderate	3	sORFs_org_Human	Alternative sORF Upstream	HEK293, Jurkat
480382	75	GTG ...	VAS ...	Ribo-seq	GTG		23	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
632706	183	TTG ...	LQQ ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, MM1S, THP-1
404389	30	TGG ...	WTP ...	Ribo-seq	TGG	moderate	4	sORFs_org_Human	Alternative sORF Upstream	BJ, HCT116, HEK293, Jurkat
95012	75	ATG ...	MVQ ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
95027	57	ATG ...	MIH ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
4544597	39	TCT ...	SSE ...	Ribo-seq MS	TCT	moderate	1	Laumont2016	Alternative InCDS Overlapping sORF	B_cell
95072	30	ATG ...	MAE ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
3299269	1041	ATG ...	MDW ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
480380	45	TTG ...	LWR ...	Ribo-seq	TTG		14	sORFs_org_Human	sORF Upstream	BJ, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
480384	36	TTG ...	LNW ...	Ribo-seq	TTG	weak	22	sORFs_org_Human	Alternative sORF Upstream	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1309696	42	TGG ...	WRA ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	sORF Upstream	HEK293
274745	48	ATG ...	MAW ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
274698	30	ATG ...	MLW ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
895391	54	CCC ...	PFF ...	Ribo-seq	CCC	weak	2	sORFs_org_Human	Alternative sORF Upstream	HEK293, Jurkat
97077	42	CTG ...	LDP ...	Ribo-seq	CTG	strong	18	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, THP-1, U2OS

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