Transcript 8399 | MetamORF

Transcript

ID CARD

MetamORF ID

8399

ENST00000488496

Name

GNL2-206

Strand

Biotype

processed_transcript

Start-end positions

37593485-37595935

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

HGNC:29925

Aliases

ENSG00000134697,
GNL2, HGNC:29925, HUMAUANTIG,
NCBI:29889, Ngp-1, Nog2,
Nug2, OFF:GNL2

Chr 1

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
105390	48	GTG ...	VSS ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, MDA-MB-231
450347	171	CCC ...	PGL ...	Ribo-seq	CCC		1	sORFs_org_Human	ncRNA sORF	HCT116
89098	207	TTG ...	LFH ...	Ribo-seq	TTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
1301707	69	GTA ...	VQR ...	Ribo-seq	GTA		1	sORFs_org_Human	ncRNA sORF	BJ
913808	87	CGA ...	RVQ ...	Ribo-seq	CGA	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
89093	150	GTG ...	VKP ...	Ribo-seq	GTG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
183604	252	GTG ...	VVQ ...	Ribo-seq	GTG		18	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
887629	117	AAC ...	NPS ...	Ribo-seq	AAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
913820	75	AAC ...	NPS ...	Ribo-seq	AAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
450343	141	AAG ...	KYK ...	Ribo-seq	AAG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
913801	30	AAT ...	NMY ...	Ribo-seq	AAT	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
913845	120	CCG ...	PDL ...	Ribo-seq	CCG		1	sORFs_org_Human	ncRNA sORF	Jurkat
8398	84	GTG ...	VQG ...	Ribo-seq	GTG	weak	21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
913822	141	GCA ...	APS ...	Ribo-seq	GCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
409863	99	AAG ...	KYK ...	Ribo-seq	AAG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
450366	213	AAA ...	KSL ...	Ribo-seq	AAA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
409865	126	CGT ...	RKP ...	Ribo-seq	CGT		3	sORFs_org_Human	ncRNA sORF	BJ, HCT116, Jurkat
913832	108	GTG ...	VKP ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, Jurkat
913825	150	AAG ...	KDG ...	Ribo-seq	AAG		2	sORFs_org_Human	ncRNA sORF	BJ, Jurkat
887627	90	GAT ...	DRV ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
295394	33	CTG ...	LNM ...	Ribo-seq	CTG	weak	16	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
409873	138	TTT ...	FVS ...	Ribo-seq	TTT		5	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
450371	255	GGC ...	GVV ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	HCT116

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