Transcript 8083 | MetamORF

Transcript

ID CARD

MetamORF ID

8083

ENST00000479255

Name

GNL2-205

Strand

Biotype

processed_transcript

Start-end positions

37566821-37568417

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

HGNC:29925

Aliases

ENSG00000134697,
GNL2, HGNC:29925, HUMAUANTIG,
NCBI:29889, Ngp-1, Nog2,
Nug2, OFF:GNL2

Chr 1

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
295151	45	TTG ...	LQN ...	Ribo-seq	TTG	weak	8	sORFs_org_Human	ncRNA sORF	BJ, Blood, HeLa, LCL, MDA-MB-231
913099	93	CAC ...	HNV ...	Ribo-seq	CAC	moderate	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
1094837	117	TTG ...	LCI ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
409761	69	GAA ...	EED ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	HCT116
105331	117	CTG ...	LSE ...	Ribo-seq	CTG		11	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, guo_2014, HEK293, HeLa, hES, HFF, LCL
105318	33	TTG ...	LVC ...	Ribo-seq	TTG	strong	7	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, hES, MM1S, RPE-1
913117	96	GCT ...	APR ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1139515	72	TTG ...	LPF ...	Ribo-seq	TTG		5	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HFF, MM1S
409759	150	AAG ...	KGK ...	Ribo-seq	AAG		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat
913113	36	GCA ...	ATA ...	Ribo-seq	GCA	moderate	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
8085	111	GTG ...	VRY ...	Ribo-seq	GTG	moderate	20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
913115	45	AGT ...	STT ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
2904409	72	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HeLa
8136	57	GTG ...	VKR ...	Ribo-seq	GTG	weak	9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231
8082	87	GTG ...	VKN ...	Ribo-seq	GTG	moderate	21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, Jurkat, MDA-MB-231, RPE-1, U2OS
1261589	171	ATG ...	MTE ...	Ribo-seq	ATG		7	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, hES, MDA-MB-231, RPE-1
105316	30	GTG ...	VCA ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, hES, HFF, RPE-1
295131	78	TTG ...	LFV ...	Ribo-seq	TTG		9	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, hES, LCL, RPE-1, U2OS
913162	90	GAA ...	EEQ ...	Ribo-seq	GAA		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
295149	36	CTG ...	LKN ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	ncRNA sORF	BJ, Blood, HeLa, LCL, MDA-MB-231
3200530	102	TTT ...	FAK ...	Ribo-seq	TTT		1	sORFs_org_Human	ncRNA sORF	HEK293

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