Transcript 8274 | MetamORF

Transcript

ID CARD

MetamORF ID

8274

ENST00000469191

Name

GNL2-204

Strand

Biotype

processed_transcript

Start-end positions

37576170-37582809

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

HGNC:29925

Aliases

ENSG00000134697,
GNL2, HGNC:29925, HUMAUANTIG,
NCBI:29889, Ngp-1, Nog2,
Nug2, OFF:GNL2

Chr 1

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
913531	72	CTA ...	LCP ...	Ribo-seq	CTA		1	sORFs_org_Human	ncRNA sORF	Jurkat
295284	63	CTG ...	LTR ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
189318	144	TTG ...	LLS ...	Ribo-seq	TTG		10	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
8276	42	TTG ...	LGS ...	Ribo-seq	TTG	strong	12	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
1209681	111	TTG ...	LLS ...	Ribo-seq	TTG		6	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231
913576	60	GTT ...	VWQ ...	Ribo-seq	GTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
295292	102	ATG ...	MYV ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	LCL
913426	30	AGT ...	SLQ ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
189320	135	ATG ...	MQA ...	Ribo-seq	ATG		11	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
189314	171	CTG ...	LSS ...	Ribo-seq	CTG		10	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
409800	33	CAA ...	QEL ...	Ribo-seq	CAA	moderate	2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
295282	45	GTG ...	VLG ...	Ribo-seq	GTG	weak	11	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
639423	60	GTG ...	VGC ...	Ribo-seq	GTG	strong	9	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HEK293, HEK293T, hES, MDA-MB-231, RPE-1, THP-1
2551435	87	ATG ...	MFS ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	HEK293
913550	30	GCG ...	AAV ...	Ribo-seq	GCG		1	sORFs_org_Human	ncRNA sORF	Jurkat
913501	60	TGG ...	WVH ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
105351	72	ATG ...	MQA ...	Ribo-seq	ATG		6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
913558	48	AGC ...	SIH ...	Ribo-seq	AGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
189312	114	TTG ...	LAR ...	Ribo-seq	TTG		12	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
183544	258	CTG ...	LRQ ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293
268982	210	GTG ...	VTL ...	Ribo-seq	GTG		7	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231
409804	108	CTG ...	LSS ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
105353	81	TTG ...	LLS ...	Ribo-seq	TTG		7	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231
8273	33	TTG ...	LAI ...	Ribo-seq	TTG	moderate	15	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
913572	45	AGG ...	REH ...	Ribo-seq	AGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
105349	51	TTG ...	LAR ...	Ribo-seq	TTG		7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231
295288	93	CTG ...	LCI ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HeLa, LCL
189316	174	TTG ...	LLS ...	Ribo-seq	TTG		9	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
913588	57	ACC ...	TRL ...	Ribo-seq	ACC		1	sORFs_org_Human	ncRNA sORF	Jurkat
295286	78	TTG ...	LNS ...	Ribo-seq	TTG		9	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
105347	240	TTG ...	LHT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	ncRNA sORF	HEK293
913485	51	TGG ...	WLS ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
295290	96	GTG ...	VLC ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HeLa, LCL

Export data