Transcript 89071 | MetamORF

Transcript

ID CARD

MetamORF ID

89071

ENST00000373062

Name

GNL2-201

Strand

Biotype

protein_coding

Start-end positions

37566816-37595921

CDS Start-stop positions

37566855-37595822

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:29925

Aliases

ENSG00000134697,
GNL2, HGNC:29925, HUMAUANTIG,
NCBI:29889, Ngp-1, Nog2,
Nug2, OFF:GNL2

Chr 1

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
295234	36	TTG ...	LRS ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
89070	33	GTG ...	VKQ ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
295228	117	GTG ...	VES ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, LCL, MDA-MB-231, THP-1
249317	87	GTG ...	VLS ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, LCL
295242	66	TTG ...	LIL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231, MM1S
295223	96	CTG ...	LWV ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, LCL, MDA-MB-231, THP-1
295343	78	GTG ...	VIC ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293T, HeLa, LCL, MDA-MB-231
295327	30	ATG ...	MTR ...	Ribo-seq	ATG	moderate	9	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HEK293, HeLa, LCL, MDA-MB-231, U2OS
1209685	51	ATG ...	MLE ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1736873	30	ATG ...	MQS ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
89076	39	TTG ...	LQV ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
1094885	147	TTG ...	LIL ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HEK293, HEK293T, HeLa
1828390	114	CTG ...	LYL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
295240	51	ATG ...	MLR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
295221	75	ATG ...	MTG ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231, THP-1
295333	39	CTG ...	LRA ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, LCL, MDA-MB-231
1828394	120	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
295237	48	CTG ...	LRT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
295341	54	ATG ...	MLK ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231
295350	84	TTG ...	LQV ...	Ribo-seq	TTG	weak	6	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HeLa, LCL, MDA-MB-231
1828392	117	GTG ...	VLY ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
189320	135	ATG ...	MQA ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1209703	132	TTG ...	LKL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HEK293T, HeLa
1261589	171	ATG ...	MTE ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1704531	69	ATG ...	MKL ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, hES, HFF
1094879	141	CTG ...	LKV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HEK293, HeLa
295339	51	CTG ...	LKC ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HeLa, LCL, MDA-MB-231
639287	45	TTG ...	LSS ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, THP-1
1209701	120	TTG ...	LAL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293T, HeLa, MDA-MB-231
1515999	69	ATG ...	MKL ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, hES, MDA-MB-231, MM1S
1736921	132	CTG ...	LKT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa
1485357	183	TTG ...	LCI ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES

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