Transcript 94469 | MetamORF

Transcript

ID CARD

MetamORF ID

94469

ENST00000609712

Name

GDI2-209

Strand

Biotype

protein_coding

Start-end positions

5794908-5813432

CDS Start-stop positions

-5811930

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

HGNC:4227

Aliases

ENSG00000057608,
GDI2, HGNC:4227, NCBI:2665,
OFF:GDI2, RABGDIB

Chr 10

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
893119	69	TAT ...	YGS ...	Ribo-seq	TAT		1	sORFs_org_Human	sORF	Jurkat
94468	63	ATG ...	MAR ...	Ribo-seq	ATG	moderate	22	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1
2615409	39	TTC ...	FPS ...	Ribo-seq	TTC		2	sORFs_org_Human	sORF	HeLa, THP-1
522184	144	TTG ...	LSP ...	Ribo-seq	TTG	moderate	11	sORFs_org_Human	sORF	BJ, HAP1, HEK293, HeLa, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
893129	33	CTT ...	LRA ...	Ribo-seq	CTT	weak	1	sORFs_org_Human	sORF	Jurkat
1438813	114	TTG ...	LLG ...	Ribo-seq	TTG		3	sORFs_org_Human	sORF	BJ, HeLa
893127	57	CCC ...	PLR ...	Ribo-seq	CCC	moderate	1	sORFs_org_Human	sORF	Jurkat
893131	108	CTT ...	LSF ...	Ribo-seq	CTT	weak	1	sORFs_org_Human	sORF	Jurkat
403930	36	TGC ...	CIY ...	Ribo-seq	TGC		2	sORFs_org_Human	sORF	HCT116, Jurkat
1305363	48	CTT ...	LFL ...	Ribo-seq	CTT	weak	1	sORFs_org_Human	sORF	BJ
190261	30	CTG ...	LRP ...	Ribo-seq	CTG	moderate	17	sORFs_org_Human	sORF	BJ, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, loayza_puch_2016, MDA-MB-231, MM1S, THP-1, U2OS
94471	117	ATG ...	MYP ...	Ribo-seq	ATG		29	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
190264	54	CTG ...	LRL ...	Ribo-seq	CTG	weak	21	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
893133	48	TTC ...	FSS ...	Ribo-seq	TTC	weak	1	sORFs_org_Human	sORF	Jurkat
522186	162	GTG ...	VAV ...	Ribo-seq	GTG	strong	11	sORFs_org_Human	sORF	BJ, HAP1, HEK293, HeLa, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
893115	33	AGT ...	SSL ...	Ribo-seq	AGT		1	sORFs_org_Human	sORF	Jurkat
893123	96	GTC ...	VSE ...	Ribo-seq	GTC		1	sORFs_org_Human	sORF	Jurkat
190266	69	GTG ...	VVT ...	Ribo-seq	GTG	strong	22	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
893135	129	TTT ...	FSS ...	Ribo-seq	TTT	weak	2	sORFs_org_Human	sORF	HEK293, Jurkat
893121	78	AGT ...	SSS ...	Ribo-seq	AGT		1	sORFs_org_Human	sORF	Jurkat
403932	60	AAA ...	KPL ...	Ribo-seq	AAA		2	sORFs_org_Human	sORF	HCT116, Jurkat

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