Transcript 1137 | MetamORF

Transcript

ID CARD

MetamORF ID

1137

ENST00000380181

Name

GDI2-202

Strand

Biotype

protein_coding

Start-end positions

5765954-5813411

CDS Start-stop positions

5766006-5813258

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

HGNC:4227

Aliases

ENSG00000057608,
GDI2, HGNC:4227, NCBI:2665,
OFF:GDI2, RABGDIB

Chr 10

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
480176	45	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293T
94460	42	TTG ...	LLA ...	Ribo-seq	TTG	moderate	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, Monocyte, U2OS
94458	45	TTG ...	LRQ ...	Ribo-seq	TTG	moderate	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1
1502374	162	CTG ...	LTE ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, HFF
3199790	117	TCC ...	SWY ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
901277	120	ACC ...	TSW ...	Ribo-seq	ACC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1136	135	TTG ...	LLA ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, MDA-MB-231, RPE-1
893097	54	CCA ...	PLI ...	Ribo-seq	CCA	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
94468	63	ATG ...	MAR ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
99815	123	GTG ...	VTS ...	Ribo-seq	GTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
190243	33	GTG ...	VMT ...	Ribo-seq	GTG	weak	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
3111486	177	GTG ...	VGP ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES
272671	111	ATG ...	MLP ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
480178	57	TTG ...	LLA ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293T, HeLa, MDA-MB-231
522176	60	CTG ...	LHD ...	Ribo-seq	CTG	weak	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1129760	30	TTG ...	LHF ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa
1818178	36	ATG ...	MLL ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF

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